createAViralPop: createAViralPop
In SMITIDstruct: Data Structure and Manipulations Tool for Host and Viral Population
Description
Create a new ViralPop object
Usage
1
2
createAViralPop(host_id, obs_time, seq, id_seq = "seq_ID",
seq_value = "seq", prop = "prop", compact = FALSE)
Arguments
host_id
host ID which viral pop is observed
obs_time
time of the observation (numeric or date)
seq
a data.frame of sequences ID, sequences and counts
id_seq
column name containing the sequences ID
seq_value
column name containing the sequences
prop
column name containing the count of each sequences
compact
boolean, default FALSE, if TRUE will try group identicals sequences (not implemented yet)
SMITIDstruct documentation built on June 14, 2019, 5:04 p.m.
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Description
Create a new ViralPop object
Usage
1 2 | createAViralPop(host_id, obs_time, seq, id_seq = "seq_ID",
seq_value = "seq", prop = "prop", compact = FALSE)
|
Arguments
host_id |
host ID which viral pop is observed |
obs_time |
time of the observation (numeric or date) |
seq |
a data.frame of sequences ID, sequences and counts |
id_seq |
column name containing the sequences ID |
seq_value |
column name containing the sequences |
prop |
column name containing the count of each sequences |
compact |
boolean, default FALSE, if TRUE will try group identicals sequences (not implemented yet) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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