getTransmissionTree: getTransmissionTree
In SMITIDstruct: Data Structure and Manipulations Tool for Host and Viral Population
Description
Usage
Arguments
Value
Examples
Description
get a transmission tree as a data.frame
Usage
1
getTransmissionTree(lhost, id = NA)
Arguments
lhost
a hostSet
id
a vector of hosts ids (default NA : all host)
Value
a data.frame as source|target|time in columns
Examples
1
2
3
4
path = system.file("extdata", "data-simul/", package="SMITIDstruct")
lhost <- list()
lhost <- loadTree(lhost,paste(path,"/tree.txt",sep=''))
print(getTransmissionTree(lhost))
SMITIDstruct documentation built on June 14, 2019, 5:04 p.m.
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Description Usage Arguments Value Examples
Description
get a transmission tree as a data.frame
Usage
1 | getTransmissionTree(lhost, id = NA)
|
Arguments
lhost |
a hostSet |
id |
a vector of hosts ids (default NA : all host) |
Value
a data.frame as source|target|time in columns
Examples
1 2 3 4 | path = system.file("extdata", "data-simul/", package="SMITIDstruct")
lhost <- list()
lhost <- loadTree(lhost,paste(path,"/tree.txt",sep=''))
print(getTransmissionTree(lhost))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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