Man pages for SMITIDstruct
Data Structure and Manipulations Tool for Host and Viral Population

addcodeaddcode
addHostaddHost
addIndexaddIndex
addViralObsaddViralObs
alleleCountalleleCount
concatViralPopconcatViralPop
createAViralPopcreateAViralPop
createHostcreateHost
createIndexcreateIndex
demo.SMITIDstruct.rundemo.SMITIDstruct.run
diversity.pDistancediversity.pDistance
diversity.sfsdiversity.sfs
getCovgetCov
getDategetDate
getDiversity.pDistancegetDiversity.pDistance
getDiversity.sfsgetDiversity.sfs
getInfosByHostAndTimegetInfosByHostAndTime
getStatesgetStates
getTimeLinegetTimeLine
getTimestampgetTimestamp
getTransmissionTreegetTransmissionTree
HostClass Host
isInCodeisInCode
is.juliendateis.juliendate
is.StringDateis.StringDate
is.timestampis.timestamp
loadCoordsloadCoords
loadCovsloadCovs
loadHostloadHost
loadStatesloadStates
loadTreeloadTree
loadTreeDFloadTreeDF
loadViralObsloadViralObs
loadViralPoploadViralPop
loadViralPopSetloadViralPopSet
mergeCodemergeCode
plotDiversity.pDistanceplotDiversity.pDistance
plotDiversity.sfsplotDiversity.sfs
setStatessetStates
simulateStatessimulateStates
SMITIDstruct-packageData Structure and Manipulation Tool for Host and Viral...
ViralPop-classClass ViralPop
SMITIDstruct documentation built on June 14, 2019, 5:04 p.m.