SPOT: Sequential Parameter Optimization Toolbox

The Sequential Parameter Optimization Toolbox provides a set of tools for Parameter-tuning, based on modelling techniques, DoE and statistical methods.

AuthorThomas Bartz-Beielstein [aut], Martin Zaefferer [cre, ctb], Joerg Ziegenhirt [ctb], Wolfgang Konen [ctb], Oliver Flasch [ctb], Patrick Koch [ctb], Martina Friese [ctb]
Date of publication2016-06-09 06:17:52
MaintainerMartin Zaefferer <martin.zaefferer@gmx.de>
LicenseGPL (>= 2)
Version1.1.0

View on CRAN

Man pages

corrcubic: Correlation: Cubic

correxp: Correlation: Exp

correxpg: Correlation: Expg

corrgauss: Correlation: Gauss

corrkriging: Correlation: Kriging

corrlin: Correlation: Lin

corrnoisygauss: Correlation: Noisy Gauss

corrnoisykriging: Correlation: Noisy Kriging

corrspherical: Correlation: Spherical

corrspline: Correlation: Spline

daceBuilder: Build DACE model

daceEvalFit: Evaluate DACE fit

daceFixTheta: Fix model parameters

daceGetFit: Get DACE fit

daceLikelihood: Wrapper for Maximum Likelihood Estimation

daceObjfunc: DACE objective function

dacePredictor: DACE predictor

dacePrepareFit: Prepare DACE fit

daceStartParameters: Start parameter setup

forrBuilder: Build Forrester Kriging

forrCoBuilder: Build Forrester Co-Kriging

forrCoLikelihood: Calculate neg. log. lik. for Co-Kriging

forrCoModel: Helper Function Forrester Co-Kriging

forrCoRegPredictor: Predict Forrester Co-Kriging Model

forrIF: helper function

forrRegLikelihood: Calculate negative log-likelihood

forrRegPredictor: Predict Forrester Model

forrReintPredictor: Predict Forrester Model (Re-interpolating)

predict.forr: Predict Forrester Model

print: Print function for spotConfig class

regpoly0: Regression: Regpoly0

regpoly1: Regression: Regpoly1

regpoly2: Regression: Regpoly2

repmat: repmat

spot: Main function for the use of SPOT

spotAlgEs: Evolution Strategy Implementation

spotAlgEsDominantReco: spotAlgEsDominantReco

spotAlgEsGetSuccessRate: get Success Rate

spotAlgEsHps: Termination hps

spotAlgEsIndividualInitial: Individual Initialization

spotAlgEsInitParentPop: Initialize Parent Population

spotAlgEsInterReco: spotAlgEsInterReco

spotAlgEsInterRecoBeSw02: spotAlgEsInterRecoBeSw02

spotAlgEsMarriage: Marriage

spotAlgEsMarriageWithReplace: Marriage with replace

spotAlgEsObjMutation: spotAlgEsObjMutation

spotAlgEsQuickTest: ES Quick Test

spotAlgEsSelection: spotAlgEsSelection

spotAlgEsStratMutation: spotAlgEsStratMutation

spotAlgEsTermination: Termination

spotAlgStartEs: Interface for an Evolution Strategy to be tuned by SPOT...

spotAlgStartEsGlg: Algorithm Interface to ES + GLG

spotAlgStartEsVar: Interface for an Evolution Strategy to be robustly tuned by...

spotAlgStartRgp: Interface for RGP to be tuned by SPOT

spotAlgStartSann: Interface for SANN to be tuned by SPOT

spotAlgStartSannVar: Interface for SANN to be tuned robustly by SPOT

spotAlgStartSmsEmoaGlg: Algorithm Interface to ES + GLG

spotCalcNoise: Calculate Noise

spotCallCoFunction: Call Correlated Function

spotCodeFormulas: Create Formula for Coding Create the formulas used by...

spotCreateDesignBasicDoe: spotCreateDesignBasicDoe

spotCreateDesignFactors: spotCreateDesignFactors

spotCreateDesignFrF2: spotCreateDesignFrF2

spotCreateDesignLhd: spotCreateDesignLhd

spotCreateDesignLhs: spotCreateDesignLhs

spotCreateDesignLhsOpt: spotCreateDesignLhsOpt

spotEnsembleMinimum: spotEnsembleMinimum

spotEnsembleModelBuilding: spotEnsembleModelBuilding

spotEnsembleModelEvaluate: spotEnsembleModelEvaluate

spotEnsembleMultiAlternate: spotEnsembleMultiAlternate

spotEnsembleMultiAverage: spotEnsembleMultiAverage

spotEnsembleMultiChoose: spotEnsembleMultiChoose

spotEnsembleMultiRank: spotEnsembleMultiRank

spotEnsembleMultiRankWeighted: spotEnsembleMultiRankWeighted

spotEnsembleSingleBLAbern: Single Ensemble: BLAbern

spotEnsembleSingleBLAnorm: Single Ensemble: BLAnorm

spotEnsembleSingleEpsGreedy: Single Ensemble: Epsilon Greedy

spotEnsembleSinglePOKER: Single Ensemble: POKER

spotEnsembleSingleRoundSearch: Single Ensemble: RoundSearch

spotEnsembleSingleSoftMax: Single Ensemble: SoftMax

spotEnsembleSingleUCB1: Single Ensemble: UCB1

spotEnsembleStatsMin: spotEnsembleStatsMin

spotEnsembleStatsSd: spotEnsembleStatsSd

spotEnsembleSubdesigns: spotEnsembleSubdesigns

spotEnsembleSummedRank: spotEnsembleSummedRank

spotEnsembleSummedRankWeighted: spotEnsembleSummedRankWeighted

spotExiPsi: spotExiPsi

spotFeedback: Ensemble Feedback Functions

spotForceFactorDesign: Force into Factors: Design Forces the type of parameters in...

spotForceFactorX: Force into Factors: X Forces the type of parameters in the...

spotFuncStartBranin: Branin function call interface for SPOT, deprecated

spotFuncStartDisBranin: Stairlike Branin function call interface for SPOT, deprecated

spotFuncStartMexicanHat: Mexican Hat function call interface for SPOT, deprecated

spotFuncStartRastrigin: Rastrigin function call interface for SPOT, deprecated

spotFuncStartRosenbrock: Rosenbrock function call interface for SPOT, deprecated

spotFuncStartSixHump: Six Hump function call interface for SPOT, deprecated

spotFuncStartSphere: Sphere function call interface for SPOT, deprecated

spotGenerateSequentialDesign: Generate Design for next sequential evaluation

spotGetAllRepeats: Get ALL Repeats Function

spotGetMergedDataMatrixB: Get Merged Data Matrix B

spotGetOptions: Set all options by conf-file or by default

spotGetRawDataMatrixB: Get Raw Data Matrix B

spotGetRawResData: Get Raw Result Data

spotGetRepeats: Get Repeats Function

spotGlgCore: Gaussian Landscape Core function

spotGlgCreate: Create Gaussian Landscape

spotGlgCreateN: Create Gaussian Landscape (multiple)

spotGlgCreateRot: Create Gaussian Landscape (rotated)

spotGlgCreateRotSearched: Create Gaussian Landscape (rotated) with random search

spotGlgEval: Gaussian Landscape Evaluation

spotGlgEvalN: Gaussian Landscape Evaluation (multiple)

spotGlgEvalRot: Gaussian Landscape Evaluation (rotated)

spotGlgInit: Initialize Gaussian Landscape

spotGlgInitN: Initialize Gaussian Landscape (multiple)

spotGui: Start the SPOT GUI

spotHelpBslash: Backslash operator.

spotHlpF.norm: Helper function for transformations/normalizing

spotHlpF.norminv: Helper function for transformations/normalizing

spotInfillExpImp: Neg. Log. of Expected Improvement Infill Criterion

spotInfillHyperVolume: MCO Infill Criterion

spotInfillLcbHyperVolume: Hypervolume Lower Confidence Bound Infill Criterion

spotInfillLcbMulti: Lower Confidence Bound Infill Criterion

spotInfillLcbSingle: Single objective lower confidence bound

spotInfillProbImp: Probability of Improvement Infill Criterion

spotInfillSD: Neg. SD Infill Criterion

spotInfillSExI2d: S-metric Expected Improvement SExI Infill Criterion

spotInitializePredictor: Initialize Predictor Initialization function that should be...

spotInstAndLoadPackages: Spot install and load required packages

spotInvChisq: Inverse Chisquared distribution

spotMcoCrowdTournament: Multi criteria sorting by a tournament scheme

spotMcoSelectionHypervol: Sorting by NDS-rank and Hypervolume Contribution, with known...

spotMcoSort: Sorting by NDS-rank and Hypervolume Contribution

spotMcoTournament: Pareto Tournament

spotMetaFlattenFbsRow: Spot Meta Flatten Fbs Row

spotModelDescentLm: Steepest Descent on RSM (linear model) Optimizes an existing...

spotModel.func: Model Prediction Interface spotMode.func creates a function...

spotModelOptim: Optimize predicted meta model Optimizes an existing fit of a...

spotModelParetoOptim: Multi criteria optimization of predicted surrogate models...

spotModel.predict: Model Prediction Interface This function is used to interface...

spotModel.train: Model Training Interface This function is used to interface...

spotNormalizeMatrix: Normalize design

spotNormalizeMatrix2: Normalize design

spotNormDesign: spotNormDesign

spotOcba: Optimal Computing Budget Allocation OCBA for SPOT

spotOptim: spotOptim: optim-like spot interface

spotOptimEs: spotOptimEs: optim-like ES interface

spotOptimInterface: Interface for Target Functions

spotOptimizationInterface: spotOptimizationInterface

spotOptimizationInterfaceMco: spotOptimizationInterfaceMco

spotOptimLHS: spotOptimLHS

SPOT-package: Sequential Parameter Optimization Toolbox in R

spotParetoOptMulti: DEPRECATED see 'spotModelParetoOptim'

spotPenalizeMissingValues: Penalize Missing Values

spotPlotBst: Plot Best Solution Found so far

spotPredictCoForrester: Meta Model Interface: Forrester's Co-Kriging

spotPredictDace: Meta Model Interface: DACE Kriging

spotPredictDice: Meta Model Interface: Dice Kriging

spotPredictEarth: Meta Model Interface: Multivariate Adaptive Regression Spline

spotPredictEsvm: Meta Model Interface: Support Vector Machine

spotPredictForrester: Meta Model Interface: Forrester's Kriging

spotPredictGausspr: Meta Model Interface: Gaussian Processes

spotPredictKrig: Meta Model Interface: Fields Kriging

spotPredictKsvm: Meta Model Interface: Support Vector Machine

spotPredictLm: Meta Model Interface: Linear Model

spotPredictLmFactor: Meta Model Interface: Linear model with factors for SPOT

spotPredictMCO: Meta Model Interface: Multi Criteria Modelling

spotPredictMlegp: Meta Model Interface: Maximum Likelihood Estimation for...

spotPredictMLP: Meta Model Interface: Multi-layer Perceptron

spotPredictNeuralnet: Meta Model Interface: Neural network

spotPredictOptMulti: DEPRECATED see 'spotModelOptim'

spotPredictQrnn: Meta Model Interface: Quantile Regression Neural Network

spotPredictRandomForest: Meta Model Interface: Random Forest A prediction model...

spotPredictRandomForestMlegp: Meta Model Interface: Random Forest combined with Mlegp A...

spotPredictTest: Meta Model Interface: Test

spotPredictTgp: Meta Model Interface: Treed Gaussian Processes

spotPredictTree: Meta Model Interface: Tree A prediction model based on rpart,...

spotPrepare: Prepares the configuration (spotConfig) for SPOT

spotPrepareData: Prepare Data for SPOT

spotPrepareDataAsMatrixC: Prepare Data As Matrix C

spotPrepareResult: Write Result File

spotPrint: Spot Print

spotReadBstFile: Read .bst File

spotReadRoi: Spot Read ROI

spotRepairMissingValues: Repair Missing Values

spotRepairMissingValuesCoKriging: Repair Missing Values

spotRepeats: Select repeats of design points, linearly increasing

spotRepeatsOcba: Select repeats of design points based on OCBA

spotReport3d: 3d Plot of Meta Model - Report Function

spotReport3dMulti: 3d Plot of Meta Model - Report Function

spotReportContour: Model Contour Plot - Report Function

spotReportContourMulti: Multi Objective Contour Plot

spotReportDefault: Default Report

spotReportEarth: Earth Report

spotReportMAMP: MAMP Model Report

spotReportMetaDefault: Default Report for Meta Runs

spotReportSAMP: SAMP Model Report

spotReportSens: Sensitivity Report

spotReportSensY: Sensitivity Report Helper Function

spotReverseNormalizeMatrix: Reverse Normalize

spotRgpTargetFunction: Target function for RGP / SPOT tuning

spotROI: Region Of Interest Constructor

spotSelectionCriteria: Model selection and error estimation

spotSeqDesignIncreaseMultTwo: Increase Sequential Design Repeats: Double

spotSeqDesignIncreasePlusOne: Increase Sequential Design Repeats Plus One

spotSExI2d: S-metric Expected Improvement SExI Infill Criterion

spotSmsEmoa: SMS-EMOA: S-Metric-Selection Evolutionary Multi-objective...

spotSmsEmoaKriging: SMS-EMOA: S-Metric-Selection Evolutionary Multi-objective...

spotStepAutoOpt: SPOT Step Auto Opt

spotStepInitial: SPOT Step: Initialize (First SPOT- Step)

spotStepMetaOpt: SPOT Step Meta

spotStepReport: SPOT Step Report

spotStepRunAlg: SPOT Step Algorithm Call

spotStepSequential: SPOT Step Sequential

spotSurf3d: spotSurf3d

spotSurfContour: spotSurfContour

spotVersion: Spot Version

spotWriteAroi: Spot Write Aroi

spotWriteBest: Spot Write Best

spotWriteDes: Spot Write Design

spotWriteLines: Spot Write Lines

spotWriteRes: Write Result File

spotWriteRoiFileForRepeats: write ROI for repeats

Testfunctions: Single objective test functions for SPOT

Files in this package

SPOT
SPOT/inst
SPOT/inst/demo03LmBranin
SPOT/inst/demo03LmBranin/demo03LmBranin.apd
SPOT/inst/demo03LmBranin/demo03LmBranin.conf
SPOT/inst/demo03LmBranin/demo03LmBranin.roi
SPOT/inst/demo06TreeSann
SPOT/inst/demo06TreeSann/demo06TreeSann.roi
SPOT/inst/demo06TreeSann/demo06TreeSann.conf
SPOT/inst/demo06TreeSann/demo06TreeSann.apd
SPOT/inst/demoMixedModelAnalysis
SPOT/inst/demoMixedModelAnalysis/glges02.bst
SPOT/inst/demoMixedModelAnalysis/glges02.res
SPOT/inst/demoMixedModelAnalysis/glges02.apd
SPOT/inst/demoMixedModelAnalysis/glges02.conf
SPOT/inst/demoMixedModelAnalysis/glges02.des
SPOT/inst/demoMixedModelAnalysis/glges02.roi
SPOT/inst/demoMixedModelAnalysis/glges01.conf
SPOT/inst/demoMixedModelAnalysis/glges01.roi
SPOT/inst/demoMixedModelAnalysis/glges01.apd
SPOT/inst/demoMixedModelAnalysis/glges02.aroi
SPOT/inst/CITATION
SPOT/inst/demo23RgpKtfg
SPOT/inst/demo23RgpKtfg/ktfgRgp001.roi
SPOT/inst/demo23RgpKtfg/spotAlgStartKtfgRgp.R
SPOT/inst/demo23RgpKtfg/ktfgRgp001.apd
SPOT/inst/demo23RgpKtfg/ktfgRgp002.apd
SPOT/inst/demo23RgpKtfg/ktfgRgp001.conf
SPOT/inst/demo23RgpKtfg/ktfgRgp002.conf
SPOT/inst/demo23RgpKtfg/ktfgRgp002.roi
SPOT/inst/demo14LmOptimSann
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.conf
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.apd
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.roi
SPOT/inst/demo10TgpSann
SPOT/inst/demo10TgpSann/demo10TgpSann.apd
SPOT/inst/demo10TgpSann/demo10TgpSann.roi
SPOT/inst/demo10TgpSann/demo10TgpSann.conf
SPOT/inst/demo02RandomForestBranin
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.conf
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.roi
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.apd
SPOT/inst/demo04MlegpBranin
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.roi
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.conf
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.apd
SPOT/inst/demo16EsBranin
SPOT/inst/demo16EsBranin/es1.conf
SPOT/inst/demo16EsBranin/es1.roi
SPOT/inst/demo16EsBranin/es1.apd
SPOT/inst/demo09MlegpSann
SPOT/inst/demo09MlegpSann/demo09MlegpSann.conf
SPOT/inst/demo09MlegpSann/demo09MlegpSann.apd
SPOT/inst/demo09MlegpSann/demo09MlegpSann.roi
SPOT/inst/demo17Rgp
SPOT/inst/demo17Rgp/rgp0001.apd
SPOT/inst/demo17Rgp/rgp0001.conf
SPOT/inst/demo17Rgp/rgp0001.roi
SPOT/inst/demo13RandomForestMlegpSann
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.apd
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.conf
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.roi
SPOT/inst/demo08LmSann
SPOT/inst/demo08LmSann/demo08LmSann.roi
SPOT/inst/demo08LmSann/demo08LmSann.apd
SPOT/inst/demo08LmSann/demo08LmSann.conf
SPOT/inst/demo07RandomForestSann
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.roi
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.apd
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.conf
SPOT/inst/demo05TgpBranin
SPOT/inst/demo05TgpBranin/demo05TgpBranin.roi
SPOT/inst/demo05TgpBranin/demo05TgpBranin.apd
SPOT/inst/demo05TgpBranin/demo05TgpBranin.conf
SPOT/inst/demo11Java
SPOT/inst/demo11Java/demo11Java.apd
SPOT/inst/demo11Java/demo11Java.conf
SPOT/inst/demo11Java/bin
SPOT/inst/demo11Java/bin/spotAlgStartOnePlusOneEsJava.R
SPOT/inst/demo11Java/bin/simpleOnePlusOneES.jar
SPOT/inst/demo11Java/bin/README.txt
SPOT/inst/demo11Java/demo11Java.roi
SPOT/inst/GUI
SPOT/inst/GUI/spotGui.jar
SPOT/inst/GUI/help.pdf
SPOT/inst/demo01TreeBranin
SPOT/inst/demo01TreeBranin/demo01TreeBranin.conf
SPOT/inst/demo01TreeBranin/demo01TreeBranin.apd
SPOT/inst/demo01TreeBranin/demo01TreeBranin.roi
SPOT/inst/doc
SPOT/inst/doc/index.html
SPOT/inst/doc/SPOT.pdf
SPOT/inst/doc/SPOTmanual.pdf
SPOT/inst/demo12Sann
SPOT/inst/demo12Sann/sann0001.conf
SPOT/inst/demo12Sann/sann0001.apd
SPOT/inst/demo12Sann/sann0001.roi
SPOT/NAMESPACE
SPOT/demo
SPOT/demo/spotDemo19MultiObjective.R
SPOT/demo/spotDemo11Java.R
SPOT/demo/spotDemo05TgpBranin.R
SPOT/demo/spotDemo22MixedModelMAMP.R
SPOT/demo/spotDemo18ForresterOptim.R
SPOT/demo/spotDemo12Sann.R
SPOT/demo/spotDemo09MlegpSann.R
SPOT/demo/spotDemo13RandomForestMlegpSann.R
SPOT/demo/spotDemo04MlegpBranin.R
SPOT/demo/spotDemo08LmSann.R
SPOT/demo/spotDemo03LmBranin.R
SPOT/demo/spotDemo14LmOptimSann.R
SPOT/demo/spotDemo01TreeBranin.R
SPOT/demo/00Index
SPOT/demo/spotDemo21MixedModelSAMP.R
SPOT/demo/spotDemo06TreeSann.R
SPOT/demo/spotDemo17Rgp.R
SPOT/demo/spotDemo07RandomForestSann.R
SPOT/demo/spotDemo20SurfacePlots.R
SPOT/demo/spotDemo16EsBranin.R
SPOT/demo/spotDemo02RandomForestBranin.R
SPOT/demo/spotDemo23RgpKtfg.R
SPOT/demo/spotDemo10TgpSann.R
SPOT/NEWS
SPOT/R
SPOT/R/spotCreateDesignFrF2.R SPOT/R/spotPredictEnsembleMultiChoose.R SPOT/R/spotFuncTools.R SPOT/R/spotFuncStartMexicanHat.R SPOT/R/spotEnsembleSingleSoftMax.R SPOT/R/spotAlgStartEs.R SPOT/R/spotReportSAMP.R SPOT/R/spotPredictEnsembleMultiRank.R SPOT/R/spotFuncStartSphere.R SPOT/R/spotFuncStartBranin.R SPOT/R/spotReport3d.R SPOT/R/spotEnsembleSinglePOKER.R SPOT/R/spotReportMetaDefault.R SPOT/R/spotPredictEnsembleMultiAlternate.R SPOT/R/spotCreateDesignFactors.R SPOT/R/spotOptimizationFunctions.R SPOT/R/spotCreateDesignLhd.R SPOT/R/spotExpectedImprovement.R SPOT/R/spotEnsembleSingleUCB1.R SPOT/R/spotReportEarth.R SPOT/R/spotPredictEnsembleMultiAverage.R SPOT/R/spotRepeats.R SPOT/R/spotModelSelection.R SPOT/R/spotPredictDace.R SPOT/R/spotReportMAMP.R SPOT/R/spotEnsembleSingleRoundSearch.R SPOT/R/spotRepairMissingValues.R SPOT/R/spotAlgStartSmsEmoaGlg.R SPOT/R/spotMcoSort.R SPOT/R/spotModelParetoOptim.R SPOT/R/spotFuncStartRastrigin.R SPOT/R/spotPredictKrig.R SPOT/R/spotPredictRandomForest.R SPOT/R/spotPredictNeuralnet.R SPOT/R/spotPredictKsvm.R SPOT/R/spotPredictMlegp.R SPOT/R/spotPredictEsvm.R SPOT/R/spotPrepareData.R SPOT/R/spotPredictCoForrester.R SPOT/R/spotPredictTest.R SPOT/R/spotReportContour.R SPOT/R/spotCreateDesignLhs.R SPOT/R/spotPredictGausspr.R SPOT/R/spotTargetFunctions.R SPOT/R/spotPredictEarth.R SPOT/R/spotMeta.R SPOT/R/spot.R SPOT/R/spotCreateDesignLhsOpt.R SPOT/R/spotSurf.R SPOT/R/spotAlgStartEsGlg.R SPOT/R/spotEnsembleFunctions.R SPOT/R/spotStatistics.R SPOT/R/spotPredictRandomForestMlegp.R
SPOT/R/sms_emoa.r
SPOT/R/spotPredictEnsembleMultiRankWeighted.R SPOT/R/spotFuncStartSixHump.R SPOT/R/spotOptim.R SPOT/R/spotPredictQrnn.R SPOT/R/spotGetOptions.R SPOT/R/spotAlgStartRgp.R SPOT/R/spotEnsembleSingleEpsGreedy.R SPOT/R/spotReportDefault.R SPOT/R/spotPredictHelpFunctions.R SPOT/R/spotPredictTgp.R SPOT/R/spotGaussianLandscapeGenerator.R SPOT/R/spotPredictLm.R SPOT/R/spotOptimEs.R SPOT/R/spotPredictForrester.R SPOT/R/spotFuncStartRosenbrock.R SPOT/R/spotPredictMCO.R SPOT/R/spotPredictTree.R SPOT/R/spotSeqDesignIncreaseFunctions.R SPOT/R/spotGui.R SPOT/R/spotPredictLmFactor.R SPOT/R/spotReportSens.R SPOT/R/spotCreateDesignBasicDoe.R SPOT/R/spotHelpFunctions.R SPOT/R/spotEnsembleSingleBLAnorm.R SPOT/R/spotGenerateSequentialDesign.R SPOT/R/spotEnsembleSingleBLAbern.R SPOT/R/spotAlgStartSann.R SPOT/R/spotPlot.R SPOT/R/spotPredictMLP.R SPOT/R/spotOcba.R SPOT/R/spotModelOptim.R SPOT/R/spotPredictDice.R
SPOT/vignettes
SPOT/vignettes/SPOT.Rnw
SPOT/MD5
SPOT/java
SPOT/java/spotGui
SPOT/java/spotGui/icon_check_unknown.gif
SPOT/java/spotGui/icon_check_valid.gif
SPOT/java/spotGui/icon_tab_algorithm.png
SPOT/java/spotGui/temp.gif
SPOT/java/spotGui/tarFuncGenerator.java
SPOT/java/spotGui/fileIO.java
SPOT/java/spotGui/icon_tab_conf.gif
SPOT/java/spotGui/icon_tab_run.gif
SPOT/java/spotGui/icon_tab_analyse.gif
SPOT/java/spotGui/spotGuiMain.java
SPOT/java/spotGui/icon_tab_roi.gif
SPOT/java/spotGui/icon_tab_welcome.gif
SPOT/java/spotGui/hlp.java
SPOT/java/spotGui/icon_check_invalid.gif
SPOT/java/spotGui/spotOfficial.jpg
SPOT/java/spotGui/icon_logo.png
SPOT/java/OnePlusOneESJava
SPOT/java/OnePlusOneESJava/de
SPOT/java/OnePlusOneESJava/de/fhkoeln
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/algorithms
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/algorithms/SimpleOnePlusOneES.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/Ball.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/IObjectiveFunction.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/ExpSurface.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/HyperEllipsoide.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/Rosenbrock.java
SPOT/DESCRIPTION
SPOT/man
SPOT/man/daceStartParameters.Rd SPOT/man/spotHlpF.norm.Rd SPOT/man/spotModel.train.Rd SPOT/man/spotMcoCrowdTournament.Rd SPOT/man/spotPredictRandomForestMlegp.Rd SPOT/man/spotEnsembleSingleUCB1.Rd SPOT/man/spotMcoSort.Rd SPOT/man/spotPredictCoForrester.Rd SPOT/man/spotStepReport.Rd SPOT/man/spotRepairMissingValuesCoKriging.Rd SPOT/man/SPOT-package.Rd SPOT/man/spotGetRawResData.Rd SPOT/man/spotEnsembleMinimum.Rd SPOT/man/spotPrepareData.Rd SPOT/man/spotGui.Rd SPOT/man/spotEnsembleStatsMin.Rd SPOT/man/spotHelpBslash.Rd SPOT/man/spotRgpTargetFunction.Rd SPOT/man/spotEnsembleSingleEpsGreedy.Rd SPOT/man/spotGlgCreateN.Rd SPOT/man/spotEnsembleSingleRoundSearch.Rd SPOT/man/corrnoisygauss.Rd SPOT/man/spotOptimizationInterface.Rd SPOT/man/spotGetRawDataMatrixB.Rd SPOT/man/spotAlgStartEsVar.Rd SPOT/man/spotSmsEmoaKriging.Rd SPOT/man/spotPredictRandomForest.Rd SPOT/man/spotAlgEsIndividualInitial.Rd SPOT/man/spotRepeatsOcba.Rd SPOT/man/spotInfillLcbSingle.Rd SPOT/man/repmat.Rd SPOT/man/spotPredictEsvm.Rd SPOT/man/spotReportEarth.Rd SPOT/man/corrkriging.Rd SPOT/man/spotGlgCreateRotSearched.Rd SPOT/man/daceBuilder.Rd SPOT/man/forrCoRegPredictor.Rd SPOT/man/spotAlgEsDominantReco.Rd SPOT/man/spotInfillSD.Rd SPOT/man/spotGlgCreateRot.Rd SPOT/man/spotEnsembleSummedRankWeighted.Rd SPOT/man/spotInfillHyperVolume.Rd SPOT/man/spotNormalizeMatrix2.Rd SPOT/man/spotFuncStartSphere.Rd SPOT/man/spotReport3d.Rd SPOT/man/spotPrepareDataAsMatrixC.Rd SPOT/man/spotModel.predict.Rd SPOT/man/corrspherical.Rd SPOT/man/spotReportMAMP.Rd SPOT/man/spotPredictQrnn.Rd SPOT/man/corrspline.Rd SPOT/man/forrCoModel.Rd SPOT/man/spotModelOptim.Rd SPOT/man/spotReportSAMP.Rd SPOT/man/spotHlpF.norminv.Rd SPOT/man/spotFuncStartRastrigin.Rd SPOT/man/forrBuilder.Rd SPOT/man/spotParetoOptMulti.Rd SPOT/man/daceObjfunc.Rd SPOT/man/spotModelDescentLm.Rd SPOT/man/spotGetAllRepeats.Rd SPOT/man/Testfunctions.Rd SPOT/man/spotAlgEsInterReco.Rd SPOT/man/spotSelectionCriteria.Rd SPOT/man/spotAlgEsGetSuccessRate.Rd SPOT/man/spotNormalizeMatrix.Rd SPOT/man/correxpg.Rd SPOT/man/spotInstAndLoadPackages.Rd SPOT/man/spotEnsembleMultiRank.Rd SPOT/man/spotMetaFlattenFbsRow.Rd SPOT/man/spotStepAutoOpt.Rd SPOT/man/spotPredictTree.Rd SPOT/man/spotForceFactorDesign.Rd SPOT/man/spotReverseNormalizeMatrix.Rd SPOT/man/spotWriteAroi.Rd SPOT/man/corrcubic.Rd SPOT/man/spotEnsembleSingleSoftMax.Rd SPOT/man/correxp.Rd SPOT/man/spotPredictDice.Rd SPOT/man/spotAlgStartSann.Rd SPOT/man/spotGenerateSequentialDesign.Rd SPOT/man/spotStepSequential.Rd SPOT/man/dacePrepareFit.Rd SPOT/man/spotAlgEs.Rd SPOT/man/spotEnsembleSubdesigns.Rd SPOT/man/spotAlgStartRgp.Rd SPOT/man/spotWriteLines.Rd SPOT/man/spotGlgEval.Rd SPOT/man/spotReportContour.Rd SPOT/man/spotEnsembleSingleBLAbern.Rd SPOT/man/forrCoBuilder.Rd SPOT/man/forrRegPredictor.Rd SPOT/man/spotPredictMLP.Rd SPOT/man/spotPrepare.Rd SPOT/man/daceFixTheta.Rd SPOT/man/spotVersion.Rd SPOT/man/spotAlgEsStratMutation.Rd SPOT/man/spotEnsembleMultiChoose.Rd SPOT/man/spotOptimizationInterfaceMco.Rd SPOT/man/spotPredictMCO.Rd SPOT/man/spotInfillProbImp.Rd SPOT/man/regpoly2.Rd SPOT/man/spotPredictLm.Rd SPOT/man/spotMcoSelectionHypervol.Rd SPOT/man/spotCreateDesignFactors.Rd SPOT/man/spotReportMetaDefault.Rd SPOT/man/spotSurfContour.Rd SPOT/man/spotNormDesign.Rd SPOT/man/spotPrepareResult.Rd SPOT/man/spotPredictKrig.Rd SPOT/man/spotPredictForrester.Rd SPOT/man/spotPredictTest.Rd SPOT/man/spotInfillExpImp.Rd SPOT/man/spotSmsEmoa.Rd SPOT/man/forrRegLikelihood.Rd SPOT/man/spotOptim.Rd SPOT/man/spotPredictDace.Rd SPOT/man/spotPredictNeuralnet.Rd SPOT/man/spotInfillSExI2d.Rd SPOT/man/spotStepMetaOpt.Rd SPOT/man/corrnoisykriging.Rd SPOT/man/spotEnsembleMultiAlternate.Rd SPOT/man/spotOcba.Rd SPOT/man/forrReintPredictor.Rd SPOT/man/spotAlgEsMarriageWithReplace.Rd SPOT/man/spotModel.func.Rd SPOT/man/spotModelParetoOptim.Rd SPOT/man/spotFuncStartSixHump.Rd SPOT/man/spotPredictGausspr.Rd SPOT/man/spotRepairMissingValues.Rd SPOT/man/spotStepRunAlg.Rd SPOT/man/regpoly1.Rd SPOT/man/spotROI.Rd SPOT/man/forrCoLikelihood.Rd SPOT/man/spotFeedback.Rd SPOT/man/spotEnsembleSingleBLAnorm.Rd SPOT/man/spotGetRepeats.Rd SPOT/man/spotWriteRes.Rd SPOT/man/spotCalcNoise.Rd SPOT/man/spotInfillLcbMulti.Rd SPOT/man/spotCreateDesignLhs.Rd SPOT/man/spotAlgEsHps.Rd SPOT/man/spotGlgInit.Rd SPOT/man/spotGlgInitN.Rd SPOT/man/spotOptimEs.Rd SPOT/man/spotAlgEsInterRecoBeSw02.Rd SPOT/man/spotGetMergedDataMatrixB.Rd SPOT/man/spotAlgStartSannVar.Rd SPOT/man/spotPredictOptMulti.Rd SPOT/man/spotPenalizeMissingValues.Rd SPOT/man/spotEnsembleMultiAverage.Rd SPOT/man/spotCallCoFunction.Rd SPOT/man/spotAlgStartEs.Rd SPOT/man/daceGetFit.Rd SPOT/man/dacePredictor.Rd SPOT/man/spotStepInitial.Rd SPOT/man/spotForceFactorX.Rd SPOT/man/spotAlgStartSmsEmoaGlg.Rd SPOT/man/spotInvChisq.Rd SPOT/man/spotReportContourMulti.Rd SPOT/man/spotAlgEsInitParentPop.Rd SPOT/man/daceLikelihood.Rd SPOT/man/spotFuncStartMexicanHat.Rd SPOT/man/spotInfillLcbHyperVolume.Rd SPOT/man/spotSeqDesignIncreaseMultTwo.Rd SPOT/man/spotPredictEarth.Rd SPOT/man/spotGetOptions.Rd SPOT/man/spotPredictTgp.Rd SPOT/man/spotAlgEsQuickTest.Rd SPOT/man/spotOptimLHS.Rd SPOT/man/spotEnsembleMultiRankWeighted.Rd SPOT/man/spotWriteBest.Rd SPOT/man/daceEvalFit.Rd SPOT/man/spotAlgEsTermination.Rd SPOT/man/spotReportSensY.Rd SPOT/man/spotWriteRoiFileForRepeats.Rd SPOT/man/spotPrint.Rd SPOT/man/spotMcoTournament.Rd SPOT/man/forrIF.Rd SPOT/man/spotExiPsi.Rd SPOT/man/spot.Rd SPOT/man/spotInitializePredictor.Rd SPOT/man/spotRepeats.Rd SPOT/man/spotPredictKsvm.Rd SPOT/man/spotGlgEvalN.Rd SPOT/man/spotSeqDesignIncreasePlusOne.Rd SPOT/man/corrgauss.Rd SPOT/man/spotWriteDes.Rd SPOT/man/spotCreateDesignLhd.Rd SPOT/man/spotFuncStartRosenbrock.Rd SPOT/man/spotCreateDesignFrF2.Rd SPOT/man/print.Rd SPOT/man/spotEnsembleModelBuilding.Rd SPOT/man/spotReportSens.Rd SPOT/man/spotAlgEsSelection.Rd SPOT/man/spotCreateDesignLhsOpt.Rd SPOT/man/spotSExI2d.Rd SPOT/man/spotAlgStartEsGlg.Rd SPOT/man/spotCodeFormulas.Rd SPOT/man/spotEnsembleSinglePOKER.Rd SPOT/man/spotPlotBst.Rd SPOT/man/spotReadBstFile.Rd SPOT/man/spotGlgCreate.Rd SPOT/man/spotAlgEsObjMutation.Rd SPOT/man/spotOptimInterface.Rd SPOT/man/spotEnsembleStatsSd.Rd SPOT/man/spotPredictLmFactor.Rd SPOT/man/spotFuncStartBranin.Rd SPOT/man/spotReadRoi.Rd SPOT/man/spotReport3dMulti.Rd SPOT/man/spotEnsembleSummedRank.Rd SPOT/man/spotAlgEsMarriage.Rd SPOT/man/spotEnsembleModelEvaluate.Rd SPOT/man/spotFuncStartDisBranin.Rd SPOT/man/spotSurf3d.Rd SPOT/man/regpoly0.Rd SPOT/man/spotPredictMlegp.Rd SPOT/man/corrlin.Rd SPOT/man/spotGlgCore.Rd SPOT/man/predict.forr.Rd SPOT/man/spotReportDefault.Rd SPOT/man/spotCreateDesignBasicDoe.Rd SPOT/man/spotGlgEvalRot.Rd
SPOT/.Rinstignore

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