SPOT: Sequential Parameter Optimization Toolbox

The Sequential Parameter Optimization Toolbox provides a set of tools for Parameter-tuning, based on modelling techniques, DoE and statistical methods.

AuthorThomas Bartz-Beielstein [aut], Martin Zaefferer [cre, ctb], Joerg Ziegenhirt [ctb], Wolfgang Konen [ctb], Oliver Flasch [ctb], Patrick Koch [ctb], Martina Friese [ctb]
Date of publication2016-06-09 06:17:52
MaintainerMartin Zaefferer <martin.zaefferer@gmx.de>
LicenseGPL (>= 2)
Version1.1.0

View on CRAN

Man pages

corrcubic: Correlation: Cubic

correxp: Correlation: Exp

correxpg: Correlation: Expg

corrgauss: Correlation: Gauss

corrkriging: Correlation: Kriging

corrlin: Correlation: Lin

corrnoisygauss: Correlation: Noisy Gauss

corrnoisykriging: Correlation: Noisy Kriging

corrspherical: Correlation: Spherical

corrspline: Correlation: Spline

daceBuilder: Build DACE model

daceEvalFit: Evaluate DACE fit

daceFixTheta: Fix model parameters

daceGetFit: Get DACE fit

daceLikelihood: Wrapper for Maximum Likelihood Estimation

daceObjfunc: DACE objective function

dacePredictor: DACE predictor

dacePrepareFit: Prepare DACE fit

daceStartParameters: Start parameter setup

forrBuilder: Build Forrester Kriging

forrCoBuilder: Build Forrester Co-Kriging

forrCoLikelihood: Calculate neg. log. lik. for Co-Kriging

forrCoModel: Helper Function Forrester Co-Kriging

forrCoRegPredictor: Predict Forrester Co-Kriging Model

forrIF: helper function

forrRegLikelihood: Calculate negative log-likelihood

forrRegPredictor: Predict Forrester Model

forrReintPredictor: Predict Forrester Model (Re-interpolating)

predict.forr: Predict Forrester Model

print: Print function for spotConfig class

regpoly0: Regression: Regpoly0

regpoly1: Regression: Regpoly1

regpoly2: Regression: Regpoly2

repmat: repmat

spot: Main function for the use of SPOT

spotAlgEs: Evolution Strategy Implementation

spotAlgEsDominantReco: spotAlgEsDominantReco

spotAlgEsGetSuccessRate: get Success Rate

spotAlgEsHps: Termination hps

spotAlgEsIndividualInitial: Individual Initialization

spotAlgEsInitParentPop: Initialize Parent Population

spotAlgEsInterReco: spotAlgEsInterReco

spotAlgEsInterRecoBeSw02: spotAlgEsInterRecoBeSw02

spotAlgEsMarriage: Marriage

spotAlgEsMarriageWithReplace: Marriage with replace

spotAlgEsObjMutation: spotAlgEsObjMutation

spotAlgEsQuickTest: ES Quick Test

spotAlgEsSelection: spotAlgEsSelection

spotAlgEsStratMutation: spotAlgEsStratMutation

spotAlgEsTermination: Termination

spotAlgStartEs: Interface for an Evolution Strategy to be tuned by SPOT...

spotAlgStartEsGlg: Algorithm Interface to ES + GLG

spotAlgStartEsVar: Interface for an Evolution Strategy to be robustly tuned by...

spotAlgStartRgp: Interface for RGP to be tuned by SPOT

spotAlgStartSann: Interface for SANN to be tuned by SPOT

spotAlgStartSannVar: Interface for SANN to be tuned robustly by SPOT

spotAlgStartSmsEmoaGlg: Algorithm Interface to ES + GLG

spotCalcNoise: Calculate Noise

spotCallCoFunction: Call Correlated Function

spotCodeFormulas: Create Formula for Coding Create the formulas used by...

spotCreateDesignBasicDoe: spotCreateDesignBasicDoe

spotCreateDesignFactors: spotCreateDesignFactors

spotCreateDesignFrF2: spotCreateDesignFrF2

spotCreateDesignLhd: spotCreateDesignLhd

spotCreateDesignLhs: spotCreateDesignLhs

spotCreateDesignLhsOpt: spotCreateDesignLhsOpt

spotEnsembleMinimum: spotEnsembleMinimum

spotEnsembleModelBuilding: spotEnsembleModelBuilding

spotEnsembleModelEvaluate: spotEnsembleModelEvaluate

spotEnsembleMultiAlternate: spotEnsembleMultiAlternate

spotEnsembleMultiAverage: spotEnsembleMultiAverage

spotEnsembleMultiChoose: spotEnsembleMultiChoose

spotEnsembleMultiRank: spotEnsembleMultiRank

spotEnsembleMultiRankWeighted: spotEnsembleMultiRankWeighted

spotEnsembleSingleBLAbern: Single Ensemble: BLAbern

spotEnsembleSingleBLAnorm: Single Ensemble: BLAnorm

spotEnsembleSingleEpsGreedy: Single Ensemble: Epsilon Greedy

spotEnsembleSinglePOKER: Single Ensemble: POKER

spotEnsembleSingleRoundSearch: Single Ensemble: RoundSearch

spotEnsembleSingleSoftMax: Single Ensemble: SoftMax

spotEnsembleSingleUCB1: Single Ensemble: UCB1

spotEnsembleStatsMin: spotEnsembleStatsMin

spotEnsembleStatsSd: spotEnsembleStatsSd

spotEnsembleSubdesigns: spotEnsembleSubdesigns

spotEnsembleSummedRank: spotEnsembleSummedRank

spotEnsembleSummedRankWeighted: spotEnsembleSummedRankWeighted

spotExiPsi: spotExiPsi

spotFeedback: Ensemble Feedback Functions

spotForceFactorDesign: Force into Factors: Design Forces the type of parameters in...

spotForceFactorX: Force into Factors: X Forces the type of parameters in the...

spotFuncStartBranin: Branin function call interface for SPOT, deprecated

spotFuncStartDisBranin: Stairlike Branin function call interface for SPOT, deprecated

spotFuncStartMexicanHat: Mexican Hat function call interface for SPOT, deprecated

spotFuncStartRastrigin: Rastrigin function call interface for SPOT, deprecated

spotFuncStartRosenbrock: Rosenbrock function call interface for SPOT, deprecated

spotFuncStartSixHump: Six Hump function call interface for SPOT, deprecated

spotFuncStartSphere: Sphere function call interface for SPOT, deprecated

spotGenerateSequentialDesign: Generate Design for next sequential evaluation

spotGetAllRepeats: Get ALL Repeats Function

spotGetMergedDataMatrixB: Get Merged Data Matrix B

spotGetOptions: Set all options by conf-file or by default

spotGetRawDataMatrixB: Get Raw Data Matrix B

spotGetRawResData: Get Raw Result Data

spotGetRepeats: Get Repeats Function

spotGlgCore: Gaussian Landscape Core function

spotGlgCreate: Create Gaussian Landscape

spotGlgCreateN: Create Gaussian Landscape (multiple)

spotGlgCreateRot: Create Gaussian Landscape (rotated)

spotGlgCreateRotSearched: Create Gaussian Landscape (rotated) with random search

spotGlgEval: Gaussian Landscape Evaluation

spotGlgEvalN: Gaussian Landscape Evaluation (multiple)

spotGlgEvalRot: Gaussian Landscape Evaluation (rotated)

spotGlgInit: Initialize Gaussian Landscape

spotGlgInitN: Initialize Gaussian Landscape (multiple)

spotGui: Start the SPOT GUI

spotHelpBslash: Backslash operator.

spotHlpF.norm: Helper function for transformations/normalizing

spotHlpF.norminv: Helper function for transformations/normalizing

spotInfillExpImp: Neg. Log. of Expected Improvement Infill Criterion

spotInfillHyperVolume: MCO Infill Criterion

spotInfillLcbHyperVolume: Hypervolume Lower Confidence Bound Infill Criterion

spotInfillLcbMulti: Lower Confidence Bound Infill Criterion

spotInfillLcbSingle: Single objective lower confidence bound

spotInfillProbImp: Probability of Improvement Infill Criterion

spotInfillSD: Neg. SD Infill Criterion

spotInfillSExI2d: S-metric Expected Improvement SExI Infill Criterion

spotInitializePredictor: Initialize Predictor Initialization function that should be...

spotInstAndLoadPackages: Spot install and load required packages

spotInvChisq: Inverse Chisquared distribution

spotMcoCrowdTournament: Multi criteria sorting by a tournament scheme

spotMcoSelectionHypervol: Sorting by NDS-rank and Hypervolume Contribution, with known...

spotMcoSort: Sorting by NDS-rank and Hypervolume Contribution

spotMcoTournament: Pareto Tournament

spotMetaFlattenFbsRow: Spot Meta Flatten Fbs Row

spotModelDescentLm: Steepest Descent on RSM (linear model) Optimizes an existing...

spotModel.func: Model Prediction Interface spotMode.func creates a function...

spotModelOptim: Optimize predicted meta model Optimizes an existing fit of a...

spotModelParetoOptim: Multi criteria optimization of predicted surrogate models...

spotModel.predict: Model Prediction Interface This function is used to interface...

spotModel.train: Model Training Interface This function is used to interface...

spotNormalizeMatrix: Normalize design

spotNormalizeMatrix2: Normalize design

spotNormDesign: spotNormDesign

spotOcba: Optimal Computing Budget Allocation OCBA for SPOT

spotOptim: spotOptim: optim-like spot interface

spotOptimEs: spotOptimEs: optim-like ES interface

spotOptimInterface: Interface for Target Functions

spotOptimizationInterface: spotOptimizationInterface

spotOptimizationInterfaceMco: spotOptimizationInterfaceMco

spotOptimLHS: spotOptimLHS

SPOT-package: Sequential Parameter Optimization Toolbox in R

spotParetoOptMulti: DEPRECATED see 'spotModelParetoOptim'

spotPenalizeMissingValues: Penalize Missing Values

spotPlotBst: Plot Best Solution Found so far

spotPredictCoForrester: Meta Model Interface: Forrester's Co-Kriging

spotPredictDace: Meta Model Interface: DACE Kriging

spotPredictDice: Meta Model Interface: Dice Kriging

spotPredictEarth: Meta Model Interface: Multivariate Adaptive Regression Spline

spotPredictEsvm: Meta Model Interface: Support Vector Machine

spotPredictForrester: Meta Model Interface: Forrester's Kriging

spotPredictGausspr: Meta Model Interface: Gaussian Processes

spotPredictKrig: Meta Model Interface: Fields Kriging

spotPredictKsvm: Meta Model Interface: Support Vector Machine

spotPredictLm: Meta Model Interface: Linear Model

spotPredictLmFactor: Meta Model Interface: Linear model with factors for SPOT

spotPredictMCO: Meta Model Interface: Multi Criteria Modelling

spotPredictMlegp: Meta Model Interface: Maximum Likelihood Estimation for...

spotPredictMLP: Meta Model Interface: Multi-layer Perceptron

spotPredictNeuralnet: Meta Model Interface: Neural network

spotPredictOptMulti: DEPRECATED see 'spotModelOptim'

spotPredictQrnn: Meta Model Interface: Quantile Regression Neural Network

spotPredictRandomForest: Meta Model Interface: Random Forest A prediction model...

spotPredictRandomForestMlegp: Meta Model Interface: Random Forest combined with Mlegp A...

spotPredictTest: Meta Model Interface: Test

spotPredictTgp: Meta Model Interface: Treed Gaussian Processes

spotPredictTree: Meta Model Interface: Tree A prediction model based on rpart,...

spotPrepare: Prepares the configuration (spotConfig) for SPOT

spotPrepareData: Prepare Data for SPOT

spotPrepareDataAsMatrixC: Prepare Data As Matrix C

spotPrepareResult: Write Result File

spotPrint: Spot Print

spotReadBstFile: Read .bst File

spotReadRoi: Spot Read ROI

spotRepairMissingValues: Repair Missing Values

spotRepairMissingValuesCoKriging: Repair Missing Values

spotRepeats: Select repeats of design points, linearly increasing

spotRepeatsOcba: Select repeats of design points based on OCBA

spotReport3d: 3d Plot of Meta Model - Report Function

spotReport3dMulti: 3d Plot of Meta Model - Report Function

spotReportContour: Model Contour Plot - Report Function

spotReportContourMulti: Multi Objective Contour Plot

spotReportDefault: Default Report

spotReportEarth: Earth Report

spotReportMAMP: MAMP Model Report

spotReportMetaDefault: Default Report for Meta Runs

spotReportSAMP: SAMP Model Report

spotReportSens: Sensitivity Report

spotReportSensY: Sensitivity Report Helper Function

spotReverseNormalizeMatrix: Reverse Normalize

spotRgpTargetFunction: Target function for RGP / SPOT tuning

spotROI: Region Of Interest Constructor

spotSelectionCriteria: Model selection and error estimation

spotSeqDesignIncreaseMultTwo: Increase Sequential Design Repeats: Double

spotSeqDesignIncreasePlusOne: Increase Sequential Design Repeats Plus One

spotSExI2d: S-metric Expected Improvement SExI Infill Criterion

spotSmsEmoa: SMS-EMOA: S-Metric-Selection Evolutionary Multi-objective...

spotSmsEmoaKriging: SMS-EMOA: S-Metric-Selection Evolutionary Multi-objective...

spotStepAutoOpt: SPOT Step Auto Opt

spotStepInitial: SPOT Step: Initialize (First SPOT- Step)

spotStepMetaOpt: SPOT Step Meta

spotStepReport: SPOT Step Report

spotStepRunAlg: SPOT Step Algorithm Call

spotStepSequential: SPOT Step Sequential

spotSurf3d: spotSurf3d

spotSurfContour: spotSurfContour

spotVersion: Spot Version

spotWriteAroi: Spot Write Aroi

spotWriteBest: Spot Write Best

spotWriteDes: Spot Write Design

spotWriteLines: Spot Write Lines

spotWriteRes: Write Result File

spotWriteRoiFileForRepeats: write ROI for repeats

Testfunctions: Single objective test functions for SPOT

Functions

corrcubic Man page
correxp Man page
correxpg Man page
corrgauss Man page
corrkriging Man page
corrlin Man page
corrnoisygauss Man page
corrnoisykriging Man page
corrspherical Man page
corrspline Man page
daceBuilder Man page
daceEvalFit Man page
daceFixTheta Man page
daceGetFit Man page
daceLikelihood Man page
daceObjfunc Man page
dacePredictor Man page
dacePrepareFit Man page
daceStartParameters Man page
forrBuilder Man page
forrCoBuilder Man page
forrCoLikelihood Man page
forrCoModel Man page
forrCoRegPredictor Man page
forrIF Man page
forrRegLikelihood Man page
forrRegPredictor Man page
forrReintPredictor Man page
predict.forr Man page
print.dace Man page
print.forr Man page
print.spotConfig Man page
regpoly0 Man page
regpoly1 Man page
regpoly2 Man page
repmat Man page
spot Man page
SPOT Man page
spotAlgEs Man page
spotAlgEsDominantReco Man page
spotAlgEsGetSuccessRate Man page
spotAlgEsHps Man page
spotAlgEsIndividualInitial Man page
spotAlgEsInitParentPop Man page
spotAlgEsInterReco Man page
spotAlgEsInterRecoBeSw02 Man page
spotAlgEsMarriage Man page
spotAlgEsMarriageWithReplace Man page
spotAlgEsObjMutation Man page
spotAlgEsQuickTest Man page
spotAlgEsSelection Man page
spotAlgEsStratMutation Man page
spotAlgEsTermination Man page
spotAlgStartEs Man page
spotAlgStartEsGlg Man page
spotAlgStartEsVar Man page
spotAlgStartRgp Man page
spotAlgStartSann Man page
spotAlgStartSannVar Man page
spotAlgStartSmsEmoaGlg Man page
spotBraninFunction Man page
spotCalcNoise Man page
spotCallCoFunction Man page
spotCodeFormulas Man page
spotCreateDesignBasicDoe Man page
spotCreateDesignFactors Man page
spotCreateDesignFrF2 Man page
spotCreateDesignLhd Man page
spotCreateDesignLhs Man page
spotCreateDesignLhsOpt Man page
spotEnsembleMinimum Man page
spotEnsembleModelBuilding Man page
spotEnsembleModelEvaluate Man page
spotEnsembleMultiAlternate Man page
spotEnsembleMultiAverage Man page
spotEnsembleMultiChoose Man page
spotEnsembleMultiRank Man page
spotEnsembleMultiRankWeighted Man page
spotEnsembleSingleBLAbern Man page
spotEnsembleSingleBLAnorm Man page
spotEnsembleSingleEpsGreedy Man page
spotEnsembleSinglePOKER Man page
spotEnsembleSingleRoundSearch Man page
spotEnsembleSingleSoftMax Man page
spotEnsembleSingleUCB1 Man page
spotEnsembleStatsMin Man page
spotEnsembleStatsSd Man page
spotEnsembleSubdesigns Man page
spotEnsembleSummedRank Man page
spotEnsembleSummedRankWeighted Man page
spotExiPsi Man page
spotFeedback Man page
spotFeedback.deviation Man page
spotFeedback.error.combo Man page
spotFeedback.error.full Man page
spotFeedback.error.last Man page
spotFeedback.error.order Man page
spotFeedback.reward.bern Man page
spotFeedback.reward.norm Man page
spotFeedback.sd.interSubModelsFull Man page
spotFeedback.y Man page
spotForceFactorDesign Man page
spotForceFactorX Man page
spotFuncStartBranin Man page
spotFuncStartDisBranin Man page
spotFuncStartMexicanHat Man page
spotFuncStartRastrigin Man page
spotFuncStartRosenbrock Man page
spotFuncStartSixHump Man page
spotFuncStartSphere Man page
spotGenerateSequentialDesign Man page
spotGetAllRepeats Man page
spotGetMergedDataMatrixB Man page
spotGetOptions Man page
spotGetRawDataMatrixB Man page
spotGetRawResData Man page
spotGetRepeats Man page
spotGlgCore Man page
spotGlgCreate Man page
spotGlgCreateN Man page
spotGlgCreateRot Man page
spotGlgCreateRotSearched Man page
spotGlgEval Man page
spotGlgEvalN Man page
spotGlgEvalRot Man page
spotGlgInit Man page
spotGlgInitN Man page
spotGui Man page
spotHelpBslash Man page
spotHlpF.norm Man page
spotHlpF.norminv Man page
spotInfillExpImp Man page
spotInfillHyperVolume Man page
spotInfillLcbHyperVolume Man page
spotInfillLcbMulti Man page
spotInfillLcbSingle Man page
spotInfillProbImp Man page
spotInfillSD Man page
spotInfillSExI2d Man page
spotInitializePredictor Man page
spotInstAndLoadPackages Man page
spotInvChisq Man page
spotMcoCrowdTournament Man page
spotMcoSelectionHypervol Man page
spotMcoSort Man page
spotMcoTournament Man page
spotMetaFlattenFbsRow Man page
spotMexicanHatFunction Man page
spotModelDescentLm Man page
spotModel.func Man page
spotModelOptim Man page
spotModelParetoOptim Man page
spotModel.predict Man page
spotModel.train Man page
spotNormalizeMatrix Man page
spotNormalizeMatrix2 Man page
spotNormDesign Man page
spotOcba Man page
spotOptim Man page
spotOptimEs Man page
spotOptimInterface Man page
spotOptimizationInterface Man page
spotOptimizationInterfaceMco Man page
spotOptimLHS Man page
SPOT-package Man page
spotParetoOptMulti Man page
spotPenalizeMissingValues Man page
spotPlotBst Man page
spotPredictCoForrester Man page
spotPredictDace Man page
spotPredictDice Man page
spotPredictEarth Man page
spotPredictEsvm Man page
spotPredictForrester Man page
spotPredictGausspr Man page
spotPredictKrig Man page
spotPredictKsvm Man page
spotPredictLm Man page
spotPredictLmFactor Man page
spotPredictMCO Man page
spotPredictMlegp Man page
spotPredictMLP Man page
spotPredictNeuralnet Man page
spotPredictOptMulti Man page
spotPredictQrnn Man page
spotPredictRandomForest Man page
spotPredictRandomForestMlegp Man page
spotPredictTest Man page
spotPredictTgp Man page
spotPredictTree Man page
spotPrepare Man page
spotPrepareData Man page
spotPrepareDataAsMatrixC Man page
spotPrepareResult Man page
spotPrint Man page
spotRastriginFunction Man page
spotReadBstFile Man page
spotReadRoi Man page
spotRepairMissingValues Man page
spotRepairMissingValuesCoKriging Man page
spotRepeats Man page
spotRepeatsOcba Man page
spotReport3d Man page
spotReport3dMulti Man page
spotReportContour Man page
spotReportContourMulti Man page
spotReportDefault Man page
spotReportEarth Man page
spotReportMAMP Man page
spotReportMetaDefault Man page
spotReportSAMP Man page
spotReportSens Man page
spotReportSensY Man page
spotReverseNormalizeMatrix Man page
spotRgpTargetFunction Man page
spotROI Man page
spotRosenbrockFunction Man page
spotRosenbrockGradientFunction Man page
spotSelectionAdjustedRsq Man page
spotSelectionAic Man page
spotSelectionCriteria Man page
spotSelectionMae Man page
spotSelectionMse Man page
spotSelectionRmse Man page
spotSelectionRsq Man page
spotSelectionSae Man page
spotSelectionScaledMse Man page
spotSelectionScaledRmse Man page
spotSelectionScaledSse Man page
spotSelectionSse Man page
spotSeqDesignIncreaseMultTwo Man page
spotSeqDesignIncreasePlusOne Man page
spotSExI2d Man page
spotSixHumpFunction Man page
spotSmsEmoa Man page
spotSmsEmoaKriging Man page
spotSphere1Function Man page
spotSphereFunction Man page
spotStepAutoOpt Man page
spotStepInitial Man page
spotStepMetaOpt Man page
spotStepReport Man page
spotStepRunAlg Man page
spotStepSequential Man page
spotSurf3d Man page
spotSurfContour Man page
spotVersion Man page
spotWildFunction Man page
spotWriteAroi Man page
spotWriteBest Man page
spotWriteDes Man page
spotWriteLines Man page
spotWriteRes Man page
spotWriteRoiFileForRepeats Man page
Testfunctions Man page

Files

SPOT
SPOT/inst
SPOT/inst/demo03LmBranin
SPOT/inst/demo03LmBranin/demo03LmBranin.apd
SPOT/inst/demo03LmBranin/demo03LmBranin.conf
SPOT/inst/demo03LmBranin/demo03LmBranin.roi
SPOT/inst/demo06TreeSann
SPOT/inst/demo06TreeSann/demo06TreeSann.roi
SPOT/inst/demo06TreeSann/demo06TreeSann.conf
SPOT/inst/demo06TreeSann/demo06TreeSann.apd
SPOT/inst/demoMixedModelAnalysis
SPOT/inst/demoMixedModelAnalysis/glges02.bst
SPOT/inst/demoMixedModelAnalysis/glges02.res
SPOT/inst/demoMixedModelAnalysis/glges02.apd
SPOT/inst/demoMixedModelAnalysis/glges02.conf
SPOT/inst/demoMixedModelAnalysis/glges02.des
SPOT/inst/demoMixedModelAnalysis/glges02.roi
SPOT/inst/demoMixedModelAnalysis/glges01.conf
SPOT/inst/demoMixedModelAnalysis/glges01.roi
SPOT/inst/demoMixedModelAnalysis/glges01.apd
SPOT/inst/demoMixedModelAnalysis/glges02.aroi
SPOT/inst/CITATION
SPOT/inst/demo23RgpKtfg
SPOT/inst/demo23RgpKtfg/ktfgRgp001.roi
SPOT/inst/demo23RgpKtfg/spotAlgStartKtfgRgp.R
SPOT/inst/demo23RgpKtfg/ktfgRgp001.apd
SPOT/inst/demo23RgpKtfg/ktfgRgp002.apd
SPOT/inst/demo23RgpKtfg/ktfgRgp001.conf
SPOT/inst/demo23RgpKtfg/ktfgRgp002.conf
SPOT/inst/demo23RgpKtfg/ktfgRgp002.roi
SPOT/inst/demo14LmOptimSann
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.conf
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.apd
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.roi
SPOT/inst/demo10TgpSann
SPOT/inst/demo10TgpSann/demo10TgpSann.apd
SPOT/inst/demo10TgpSann/demo10TgpSann.roi
SPOT/inst/demo10TgpSann/demo10TgpSann.conf
SPOT/inst/demo02RandomForestBranin
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.conf
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.roi
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.apd
SPOT/inst/demo04MlegpBranin
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.roi
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.conf
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.apd
SPOT/inst/demo16EsBranin
SPOT/inst/demo16EsBranin/es1.conf
SPOT/inst/demo16EsBranin/es1.roi
SPOT/inst/demo16EsBranin/es1.apd
SPOT/inst/demo09MlegpSann
SPOT/inst/demo09MlegpSann/demo09MlegpSann.conf
SPOT/inst/demo09MlegpSann/demo09MlegpSann.apd
SPOT/inst/demo09MlegpSann/demo09MlegpSann.roi
SPOT/inst/demo17Rgp
SPOT/inst/demo17Rgp/rgp0001.apd
SPOT/inst/demo17Rgp/rgp0001.conf
SPOT/inst/demo17Rgp/rgp0001.roi
SPOT/inst/demo13RandomForestMlegpSann
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.apd
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.conf
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.roi
SPOT/inst/demo08LmSann
SPOT/inst/demo08LmSann/demo08LmSann.roi
SPOT/inst/demo08LmSann/demo08LmSann.apd
SPOT/inst/demo08LmSann/demo08LmSann.conf
SPOT/inst/demo07RandomForestSann
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.roi
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.apd
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.conf
SPOT/inst/demo05TgpBranin
SPOT/inst/demo05TgpBranin/demo05TgpBranin.roi
SPOT/inst/demo05TgpBranin/demo05TgpBranin.apd
SPOT/inst/demo05TgpBranin/demo05TgpBranin.conf
SPOT/inst/demo11Java
SPOT/inst/demo11Java/demo11Java.apd
SPOT/inst/demo11Java/demo11Java.conf
SPOT/inst/demo11Java/bin
SPOT/inst/demo11Java/bin/spotAlgStartOnePlusOneEsJava.R
SPOT/inst/demo11Java/bin/simpleOnePlusOneES.jar
SPOT/inst/demo11Java/bin/README.txt
SPOT/inst/demo11Java/demo11Java.roi
SPOT/inst/GUI
SPOT/inst/GUI/spotGui.jar
SPOT/inst/GUI/help.pdf
SPOT/inst/demo01TreeBranin
SPOT/inst/demo01TreeBranin/demo01TreeBranin.conf
SPOT/inst/demo01TreeBranin/demo01TreeBranin.apd
SPOT/inst/demo01TreeBranin/demo01TreeBranin.roi
SPOT/inst/doc
SPOT/inst/doc/index.html
SPOT/inst/doc/SPOT.pdf
SPOT/inst/doc/SPOTmanual.pdf
SPOT/inst/demo12Sann
SPOT/inst/demo12Sann/sann0001.conf
SPOT/inst/demo12Sann/sann0001.apd
SPOT/inst/demo12Sann/sann0001.roi
SPOT/NAMESPACE
SPOT/demo
SPOT/demo/spotDemo19MultiObjective.R
SPOT/demo/spotDemo11Java.R
SPOT/demo/spotDemo05TgpBranin.R
SPOT/demo/spotDemo22MixedModelMAMP.R
SPOT/demo/spotDemo18ForresterOptim.R
SPOT/demo/spotDemo12Sann.R
SPOT/demo/spotDemo09MlegpSann.R
SPOT/demo/spotDemo13RandomForestMlegpSann.R
SPOT/demo/spotDemo04MlegpBranin.R
SPOT/demo/spotDemo08LmSann.R
SPOT/demo/spotDemo03LmBranin.R
SPOT/demo/spotDemo14LmOptimSann.R
SPOT/demo/spotDemo01TreeBranin.R
SPOT/demo/00Index
SPOT/demo/spotDemo21MixedModelSAMP.R
SPOT/demo/spotDemo06TreeSann.R
SPOT/demo/spotDemo17Rgp.R
SPOT/demo/spotDemo07RandomForestSann.R
SPOT/demo/spotDemo20SurfacePlots.R
SPOT/demo/spotDemo16EsBranin.R
SPOT/demo/spotDemo02RandomForestBranin.R
SPOT/demo/spotDemo23RgpKtfg.R
SPOT/demo/spotDemo10TgpSann.R
SPOT/NEWS
SPOT/R
SPOT/R/spotCreateDesignFrF2.R SPOT/R/spotPredictEnsembleMultiChoose.R SPOT/R/spotFuncTools.R SPOT/R/spotFuncStartMexicanHat.R SPOT/R/spotEnsembleSingleSoftMax.R SPOT/R/spotAlgStartEs.R SPOT/R/spotReportSAMP.R SPOT/R/spotPredictEnsembleMultiRank.R SPOT/R/spotFuncStartSphere.R SPOT/R/spotFuncStartBranin.R SPOT/R/spotReport3d.R SPOT/R/spotEnsembleSinglePOKER.R SPOT/R/spotReportMetaDefault.R SPOT/R/spotPredictEnsembleMultiAlternate.R SPOT/R/spotCreateDesignFactors.R SPOT/R/spotOptimizationFunctions.R SPOT/R/spotCreateDesignLhd.R SPOT/R/spotExpectedImprovement.R SPOT/R/spotEnsembleSingleUCB1.R SPOT/R/spotReportEarth.R SPOT/R/spotPredictEnsembleMultiAverage.R SPOT/R/spotRepeats.R SPOT/R/spotModelSelection.R SPOT/R/spotPredictDace.R SPOT/R/spotReportMAMP.R SPOT/R/spotEnsembleSingleRoundSearch.R SPOT/R/spotRepairMissingValues.R SPOT/R/spotAlgStartSmsEmoaGlg.R SPOT/R/spotMcoSort.R SPOT/R/spotModelParetoOptim.R SPOT/R/spotFuncStartRastrigin.R SPOT/R/spotPredictKrig.R SPOT/R/spotPredictRandomForest.R SPOT/R/spotPredictNeuralnet.R SPOT/R/spotPredictKsvm.R SPOT/R/spotPredictMlegp.R SPOT/R/spotPredictEsvm.R SPOT/R/spotPrepareData.R SPOT/R/spotPredictCoForrester.R SPOT/R/spotPredictTest.R SPOT/R/spotReportContour.R SPOT/R/spotCreateDesignLhs.R SPOT/R/spotPredictGausspr.R SPOT/R/spotTargetFunctions.R SPOT/R/spotPredictEarth.R SPOT/R/spotMeta.R SPOT/R/spot.R SPOT/R/spotCreateDesignLhsOpt.R SPOT/R/spotSurf.R SPOT/R/spotAlgStartEsGlg.R SPOT/R/spotEnsembleFunctions.R SPOT/R/spotStatistics.R SPOT/R/spotPredictRandomForestMlegp.R
SPOT/R/sms_emoa.r
SPOT/R/spotPredictEnsembleMultiRankWeighted.R SPOT/R/spotFuncStartSixHump.R SPOT/R/spotOptim.R SPOT/R/spotPredictQrnn.R SPOT/R/spotGetOptions.R SPOT/R/spotAlgStartRgp.R SPOT/R/spotEnsembleSingleEpsGreedy.R SPOT/R/spotReportDefault.R SPOT/R/spotPredictHelpFunctions.R SPOT/R/spotPredictTgp.R SPOT/R/spotGaussianLandscapeGenerator.R SPOT/R/spotPredictLm.R SPOT/R/spotOptimEs.R SPOT/R/spotPredictForrester.R SPOT/R/spotFuncStartRosenbrock.R SPOT/R/spotPredictMCO.R SPOT/R/spotPredictTree.R SPOT/R/spotSeqDesignIncreaseFunctions.R SPOT/R/spotGui.R SPOT/R/spotPredictLmFactor.R SPOT/R/spotReportSens.R SPOT/R/spotCreateDesignBasicDoe.R SPOT/R/spotHelpFunctions.R SPOT/R/spotEnsembleSingleBLAnorm.R SPOT/R/spotGenerateSequentialDesign.R SPOT/R/spotEnsembleSingleBLAbern.R SPOT/R/spotAlgStartSann.R SPOT/R/spotPlot.R SPOT/R/spotPredictMLP.R SPOT/R/spotOcba.R SPOT/R/spotModelOptim.R SPOT/R/spotPredictDice.R
SPOT/vignettes
SPOT/vignettes/SPOT.Rnw
SPOT/MD5
SPOT/java
SPOT/java/spotGui
SPOT/java/spotGui/icon_check_unknown.gif
SPOT/java/spotGui/icon_check_valid.gif
SPOT/java/spotGui/icon_tab_algorithm.png
SPOT/java/spotGui/temp.gif
SPOT/java/spotGui/tarFuncGenerator.java
SPOT/java/spotGui/fileIO.java
SPOT/java/spotGui/icon_tab_conf.gif
SPOT/java/spotGui/icon_tab_run.gif
SPOT/java/spotGui/icon_tab_analyse.gif
SPOT/java/spotGui/spotGuiMain.java
SPOT/java/spotGui/icon_tab_roi.gif
SPOT/java/spotGui/icon_tab_welcome.gif
SPOT/java/spotGui/hlp.java
SPOT/java/spotGui/icon_check_invalid.gif
SPOT/java/spotGui/spotOfficial.jpg
SPOT/java/spotGui/icon_logo.png
SPOT/java/OnePlusOneESJava
SPOT/java/OnePlusOneESJava/de
SPOT/java/OnePlusOneESJava/de/fhkoeln
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/algorithms
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/algorithms/SimpleOnePlusOneES.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/Ball.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/IObjectiveFunction.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/ExpSurface.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/HyperEllipsoide.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/Rosenbrock.java
SPOT/DESCRIPTION
SPOT/man
SPOT/man/daceStartParameters.Rd SPOT/man/spotHlpF.norm.Rd SPOT/man/spotModel.train.Rd SPOT/man/spotMcoCrowdTournament.Rd SPOT/man/spotPredictRandomForestMlegp.Rd SPOT/man/spotEnsembleSingleUCB1.Rd SPOT/man/spotMcoSort.Rd SPOT/man/spotPredictCoForrester.Rd SPOT/man/spotStepReport.Rd SPOT/man/spotRepairMissingValuesCoKriging.Rd SPOT/man/SPOT-package.Rd SPOT/man/spotGetRawResData.Rd SPOT/man/spotEnsembleMinimum.Rd SPOT/man/spotPrepareData.Rd SPOT/man/spotGui.Rd SPOT/man/spotEnsembleStatsMin.Rd SPOT/man/spotHelpBslash.Rd SPOT/man/spotRgpTargetFunction.Rd SPOT/man/spotEnsembleSingleEpsGreedy.Rd SPOT/man/spotGlgCreateN.Rd SPOT/man/spotEnsembleSingleRoundSearch.Rd SPOT/man/corrnoisygauss.Rd SPOT/man/spotOptimizationInterface.Rd SPOT/man/spotGetRawDataMatrixB.Rd SPOT/man/spotAlgStartEsVar.Rd SPOT/man/spotSmsEmoaKriging.Rd SPOT/man/spotPredictRandomForest.Rd SPOT/man/spotAlgEsIndividualInitial.Rd SPOT/man/spotRepeatsOcba.Rd SPOT/man/spotInfillLcbSingle.Rd SPOT/man/repmat.Rd SPOT/man/spotPredictEsvm.Rd SPOT/man/spotReportEarth.Rd SPOT/man/corrkriging.Rd SPOT/man/spotGlgCreateRotSearched.Rd SPOT/man/daceBuilder.Rd SPOT/man/forrCoRegPredictor.Rd SPOT/man/spotAlgEsDominantReco.Rd SPOT/man/spotInfillSD.Rd SPOT/man/spotGlgCreateRot.Rd SPOT/man/spotEnsembleSummedRankWeighted.Rd SPOT/man/spotInfillHyperVolume.Rd SPOT/man/spotNormalizeMatrix2.Rd SPOT/man/spotFuncStartSphere.Rd SPOT/man/spotReport3d.Rd SPOT/man/spotPrepareDataAsMatrixC.Rd SPOT/man/spotModel.predict.Rd SPOT/man/corrspherical.Rd SPOT/man/spotReportMAMP.Rd SPOT/man/spotPredictQrnn.Rd SPOT/man/corrspline.Rd SPOT/man/forrCoModel.Rd SPOT/man/spotModelOptim.Rd SPOT/man/spotReportSAMP.Rd SPOT/man/spotHlpF.norminv.Rd SPOT/man/spotFuncStartRastrigin.Rd SPOT/man/forrBuilder.Rd SPOT/man/spotParetoOptMulti.Rd SPOT/man/daceObjfunc.Rd SPOT/man/spotModelDescentLm.Rd SPOT/man/spotGetAllRepeats.Rd SPOT/man/Testfunctions.Rd SPOT/man/spotAlgEsInterReco.Rd SPOT/man/spotSelectionCriteria.Rd SPOT/man/spotAlgEsGetSuccessRate.Rd SPOT/man/spotNormalizeMatrix.Rd SPOT/man/correxpg.Rd SPOT/man/spotInstAndLoadPackages.Rd SPOT/man/spotEnsembleMultiRank.Rd SPOT/man/spotMetaFlattenFbsRow.Rd SPOT/man/spotStepAutoOpt.Rd SPOT/man/spotPredictTree.Rd SPOT/man/spotForceFactorDesign.Rd SPOT/man/spotReverseNormalizeMatrix.Rd SPOT/man/spotWriteAroi.Rd SPOT/man/corrcubic.Rd SPOT/man/spotEnsembleSingleSoftMax.Rd SPOT/man/correxp.Rd SPOT/man/spotPredictDice.Rd SPOT/man/spotAlgStartSann.Rd SPOT/man/spotGenerateSequentialDesign.Rd SPOT/man/spotStepSequential.Rd SPOT/man/dacePrepareFit.Rd SPOT/man/spotAlgEs.Rd SPOT/man/spotEnsembleSubdesigns.Rd SPOT/man/spotAlgStartRgp.Rd SPOT/man/spotWriteLines.Rd SPOT/man/spotGlgEval.Rd SPOT/man/spotReportContour.Rd SPOT/man/spotEnsembleSingleBLAbern.Rd SPOT/man/forrCoBuilder.Rd SPOT/man/forrRegPredictor.Rd SPOT/man/spotPredictMLP.Rd SPOT/man/spotPrepare.Rd SPOT/man/daceFixTheta.Rd SPOT/man/spotVersion.Rd SPOT/man/spotAlgEsStratMutation.Rd SPOT/man/spotEnsembleMultiChoose.Rd SPOT/man/spotOptimizationInterfaceMco.Rd SPOT/man/spotPredictMCO.Rd SPOT/man/spotInfillProbImp.Rd SPOT/man/regpoly2.Rd SPOT/man/spotPredictLm.Rd SPOT/man/spotMcoSelectionHypervol.Rd SPOT/man/spotCreateDesignFactors.Rd SPOT/man/spotReportMetaDefault.Rd SPOT/man/spotSurfContour.Rd SPOT/man/spotNormDesign.Rd SPOT/man/spotPrepareResult.Rd SPOT/man/spotPredictKrig.Rd SPOT/man/spotPredictForrester.Rd SPOT/man/spotPredictTest.Rd SPOT/man/spotInfillExpImp.Rd SPOT/man/spotSmsEmoa.Rd SPOT/man/forrRegLikelihood.Rd SPOT/man/spotOptim.Rd SPOT/man/spotPredictDace.Rd SPOT/man/spotPredictNeuralnet.Rd SPOT/man/spotInfillSExI2d.Rd SPOT/man/spotStepMetaOpt.Rd SPOT/man/corrnoisykriging.Rd SPOT/man/spotEnsembleMultiAlternate.Rd SPOT/man/spotOcba.Rd SPOT/man/forrReintPredictor.Rd SPOT/man/spotAlgEsMarriageWithReplace.Rd SPOT/man/spotModel.func.Rd SPOT/man/spotModelParetoOptim.Rd SPOT/man/spotFuncStartSixHump.Rd SPOT/man/spotPredictGausspr.Rd SPOT/man/spotRepairMissingValues.Rd SPOT/man/spotStepRunAlg.Rd SPOT/man/regpoly1.Rd SPOT/man/spotROI.Rd SPOT/man/forrCoLikelihood.Rd SPOT/man/spotFeedback.Rd SPOT/man/spotEnsembleSingleBLAnorm.Rd SPOT/man/spotGetRepeats.Rd SPOT/man/spotWriteRes.Rd SPOT/man/spotCalcNoise.Rd SPOT/man/spotInfillLcbMulti.Rd SPOT/man/spotCreateDesignLhs.Rd SPOT/man/spotAlgEsHps.Rd SPOT/man/spotGlgInit.Rd SPOT/man/spotGlgInitN.Rd SPOT/man/spotOptimEs.Rd SPOT/man/spotAlgEsInterRecoBeSw02.Rd SPOT/man/spotGetMergedDataMatrixB.Rd SPOT/man/spotAlgStartSannVar.Rd SPOT/man/spotPredictOptMulti.Rd SPOT/man/spotPenalizeMissingValues.Rd SPOT/man/spotEnsembleMultiAverage.Rd SPOT/man/spotCallCoFunction.Rd SPOT/man/spotAlgStartEs.Rd SPOT/man/daceGetFit.Rd SPOT/man/dacePredictor.Rd SPOT/man/spotStepInitial.Rd SPOT/man/spotForceFactorX.Rd SPOT/man/spotAlgStartSmsEmoaGlg.Rd SPOT/man/spotInvChisq.Rd SPOT/man/spotReportContourMulti.Rd SPOT/man/spotAlgEsInitParentPop.Rd SPOT/man/daceLikelihood.Rd SPOT/man/spotFuncStartMexicanHat.Rd SPOT/man/spotInfillLcbHyperVolume.Rd SPOT/man/spotSeqDesignIncreaseMultTwo.Rd SPOT/man/spotPredictEarth.Rd SPOT/man/spotGetOptions.Rd SPOT/man/spotPredictTgp.Rd SPOT/man/spotAlgEsQuickTest.Rd SPOT/man/spotOptimLHS.Rd SPOT/man/spotEnsembleMultiRankWeighted.Rd SPOT/man/spotWriteBest.Rd SPOT/man/daceEvalFit.Rd SPOT/man/spotAlgEsTermination.Rd SPOT/man/spotReportSensY.Rd SPOT/man/spotWriteRoiFileForRepeats.Rd SPOT/man/spotPrint.Rd SPOT/man/spotMcoTournament.Rd SPOT/man/forrIF.Rd SPOT/man/spotExiPsi.Rd SPOT/man/spot.Rd SPOT/man/spotInitializePredictor.Rd SPOT/man/spotRepeats.Rd SPOT/man/spotPredictKsvm.Rd SPOT/man/spotGlgEvalN.Rd SPOT/man/spotSeqDesignIncreasePlusOne.Rd SPOT/man/corrgauss.Rd SPOT/man/spotWriteDes.Rd SPOT/man/spotCreateDesignLhd.Rd SPOT/man/spotFuncStartRosenbrock.Rd SPOT/man/spotCreateDesignFrF2.Rd SPOT/man/print.Rd SPOT/man/spotEnsembleModelBuilding.Rd SPOT/man/spotReportSens.Rd SPOT/man/spotAlgEsSelection.Rd SPOT/man/spotCreateDesignLhsOpt.Rd SPOT/man/spotSExI2d.Rd SPOT/man/spotAlgStartEsGlg.Rd SPOT/man/spotCodeFormulas.Rd SPOT/man/spotEnsembleSinglePOKER.Rd SPOT/man/spotPlotBst.Rd SPOT/man/spotReadBstFile.Rd SPOT/man/spotGlgCreate.Rd SPOT/man/spotAlgEsObjMutation.Rd SPOT/man/spotOptimInterface.Rd SPOT/man/spotEnsembleStatsSd.Rd SPOT/man/spotPredictLmFactor.Rd SPOT/man/spotFuncStartBranin.Rd SPOT/man/spotReadRoi.Rd SPOT/man/spotReport3dMulti.Rd SPOT/man/spotEnsembleSummedRank.Rd SPOT/man/spotAlgEsMarriage.Rd SPOT/man/spotEnsembleModelEvaluate.Rd SPOT/man/spotFuncStartDisBranin.Rd SPOT/man/spotSurf3d.Rd SPOT/man/regpoly0.Rd SPOT/man/spotPredictMlegp.Rd SPOT/man/corrlin.Rd SPOT/man/spotGlgCore.Rd SPOT/man/predict.forr.Rd SPOT/man/spotReportDefault.Rd SPOT/man/spotCreateDesignBasicDoe.Rd SPOT/man/spotGlgEvalRot.Rd
SPOT/.Rinstignore

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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