SPOT: Sequential Parameter Optimization Toolbox

The Sequential Parameter Optimization Toolbox provides a set of tools for Parameter-tuning, based on modelling techniques, DoE and statistical methods.

Author
Thomas Bartz-Beielstein [aut], Martin Zaefferer [cre, ctb], Joerg Ziegenhirt [ctb], Wolfgang Konen [ctb], Oliver Flasch [ctb], Patrick Koch [ctb], Martina Friese [ctb]
Date of publication
2016-06-09 06:17:52
Maintainer
Martin Zaefferer <martin.zaefferer@gmx.de>
License
GPL (>= 2)
Version
1.1.0

View on CRAN

Man pages

corrcubic
Correlation: Cubic
correxp
Correlation: Exp
correxpg
Correlation: Expg
corrgauss
Correlation: Gauss
corrkriging
Correlation: Kriging
corrlin
Correlation: Lin
corrnoisygauss
Correlation: Noisy Gauss
corrnoisykriging
Correlation: Noisy Kriging
corrspherical
Correlation: Spherical
corrspline
Correlation: Spline
daceBuilder
Build DACE model
daceEvalFit
Evaluate DACE fit
daceFixTheta
Fix model parameters
daceGetFit
Get DACE fit
daceLikelihood
Wrapper for Maximum Likelihood Estimation
daceObjfunc
DACE objective function
dacePredictor
DACE predictor
dacePrepareFit
Prepare DACE fit
daceStartParameters
Start parameter setup
forrBuilder
Build Forrester Kriging
forrCoBuilder
Build Forrester Co-Kriging
forrCoLikelihood
Calculate neg. log. lik. for Co-Kriging
forrCoModel
Helper Function Forrester Co-Kriging
forrCoRegPredictor
Predict Forrester Co-Kriging Model
forrIF
helper function
forrRegLikelihood
Calculate negative log-likelihood
forrRegPredictor
Predict Forrester Model
forrReintPredictor
Predict Forrester Model (Re-interpolating)
predict.forr
Predict Forrester Model
print
Print function for spotConfig class
regpoly0
Regression: Regpoly0
regpoly1
Regression: Regpoly1
regpoly2
Regression: Regpoly2
repmat
repmat
spot
Main function for the use of SPOT
spotAlgEs
Evolution Strategy Implementation
spotAlgEsDominantReco
spotAlgEsDominantReco
spotAlgEsGetSuccessRate
get Success Rate
spotAlgEsHps
Termination hps
spotAlgEsIndividualInitial
Individual Initialization
spotAlgEsInitParentPop
Initialize Parent Population
spotAlgEsInterReco
spotAlgEsInterReco
spotAlgEsInterRecoBeSw02
spotAlgEsInterRecoBeSw02
spotAlgEsMarriage
Marriage
spotAlgEsMarriageWithReplace
Marriage with replace
spotAlgEsObjMutation
spotAlgEsObjMutation
spotAlgEsQuickTest
ES Quick Test
spotAlgEsSelection
spotAlgEsSelection
spotAlgEsStratMutation
spotAlgEsStratMutation
spotAlgEsTermination
Termination
spotAlgStartEs
Interface for an Evolution Strategy to be tuned by SPOT...
spotAlgStartEsGlg
Algorithm Interface to ES + GLG
spotAlgStartEsVar
Interface for an Evolution Strategy to be robustly tuned by...
spotAlgStartRgp
Interface for RGP to be tuned by SPOT
spotAlgStartSann
Interface for SANN to be tuned by SPOT
spotAlgStartSannVar
Interface for SANN to be tuned robustly by SPOT
spotAlgStartSmsEmoaGlg
Algorithm Interface to ES + GLG
spotCalcNoise
Calculate Noise
spotCallCoFunction
Call Correlated Function
spotCodeFormulas
Create Formula for Coding Create the formulas used by...
spotCreateDesignBasicDoe
spotCreateDesignBasicDoe
spotCreateDesignFactors
spotCreateDesignFactors
spotCreateDesignFrF2
spotCreateDesignFrF2
spotCreateDesignLhd
spotCreateDesignLhd
spotCreateDesignLhs
spotCreateDesignLhs
spotCreateDesignLhsOpt
spotCreateDesignLhsOpt
spotEnsembleMinimum
spotEnsembleMinimum
spotEnsembleModelBuilding
spotEnsembleModelBuilding
spotEnsembleModelEvaluate
spotEnsembleModelEvaluate
spotEnsembleMultiAlternate
spotEnsembleMultiAlternate
spotEnsembleMultiAverage
spotEnsembleMultiAverage
spotEnsembleMultiChoose
spotEnsembleMultiChoose
spotEnsembleMultiRank
spotEnsembleMultiRank
spotEnsembleMultiRankWeighted
spotEnsembleMultiRankWeighted
spotEnsembleSingleBLAbern
Single Ensemble: BLAbern
spotEnsembleSingleBLAnorm
Single Ensemble: BLAnorm
spotEnsembleSingleEpsGreedy
Single Ensemble: Epsilon Greedy
spotEnsembleSinglePOKER
Single Ensemble: POKER
spotEnsembleSingleRoundSearch
Single Ensemble: RoundSearch
spotEnsembleSingleSoftMax
Single Ensemble: SoftMax
spotEnsembleSingleUCB1
Single Ensemble: UCB1
spotEnsembleStatsMin
spotEnsembleStatsMin
spotEnsembleStatsSd
spotEnsembleStatsSd
spotEnsembleSubdesigns
spotEnsembleSubdesigns
spotEnsembleSummedRank
spotEnsembleSummedRank
spotEnsembleSummedRankWeighted
spotEnsembleSummedRankWeighted
spotExiPsi
spotExiPsi
spotFeedback
Ensemble Feedback Functions
spotForceFactorDesign
Force into Factors: Design Forces the type of parameters in...
spotForceFactorX
Force into Factors: X Forces the type of parameters in the...
spotFuncStartBranin
Branin function call interface for SPOT, deprecated
spotFuncStartDisBranin
Stairlike Branin function call interface for SPOT, deprecated
spotFuncStartMexicanHat
Mexican Hat function call interface for SPOT, deprecated
spotFuncStartRastrigin
Rastrigin function call interface for SPOT, deprecated
spotFuncStartRosenbrock
Rosenbrock function call interface for SPOT, deprecated
spotFuncStartSixHump
Six Hump function call interface for SPOT, deprecated
spotFuncStartSphere
Sphere function call interface for SPOT, deprecated
spotGenerateSequentialDesign
Generate Design for next sequential evaluation
spotGetAllRepeats
Get ALL Repeats Function
spotGetMergedDataMatrixB
Get Merged Data Matrix B
spotGetOptions
Set all options by conf-file or by default
spotGetRawDataMatrixB
Get Raw Data Matrix B
spotGetRawResData
Get Raw Result Data
spotGetRepeats
Get Repeats Function
spotGlgCore
Gaussian Landscape Core function
spotGlgCreate
Create Gaussian Landscape
spotGlgCreateN
Create Gaussian Landscape (multiple)
spotGlgCreateRot
Create Gaussian Landscape (rotated)
spotGlgCreateRotSearched
Create Gaussian Landscape (rotated) with random search
spotGlgEval
Gaussian Landscape Evaluation
spotGlgEvalN
Gaussian Landscape Evaluation (multiple)
spotGlgEvalRot
Gaussian Landscape Evaluation (rotated)
spotGlgInit
Initialize Gaussian Landscape
spotGlgInitN
Initialize Gaussian Landscape (multiple)
spotGui
Start the SPOT GUI
spotHelpBslash
Backslash operator.
spotHlpF.norm
Helper function for transformations/normalizing
spotHlpF.norminv
Helper function for transformations/normalizing
spotInfillExpImp
Neg. Log. of Expected Improvement Infill Criterion
spotInfillHyperVolume
MCO Infill Criterion
spotInfillLcbHyperVolume
Hypervolume Lower Confidence Bound Infill Criterion
spotInfillLcbMulti
Lower Confidence Bound Infill Criterion
spotInfillLcbSingle
Single objective lower confidence bound
spotInfillProbImp
Probability of Improvement Infill Criterion
spotInfillSD
Neg. SD Infill Criterion
spotInfillSExI2d
S-metric Expected Improvement SExI Infill Criterion
spotInitializePredictor
Initialize Predictor Initialization function that should be...
spotInstAndLoadPackages
Spot install and load required packages
spotInvChisq
Inverse Chisquared distribution
spotMcoCrowdTournament
Multi criteria sorting by a tournament scheme
spotMcoSelectionHypervol
Sorting by NDS-rank and Hypervolume Contribution, with known...
spotMcoSort
Sorting by NDS-rank and Hypervolume Contribution
spotMcoTournament
Pareto Tournament
spotMetaFlattenFbsRow
Spot Meta Flatten Fbs Row
spotModelDescentLm
Steepest Descent on RSM (linear model) Optimizes an existing...
spotModel.func
Model Prediction Interface spotMode.func creates a function...
spotModelOptim
Optimize predicted meta model Optimizes an existing fit of a...
spotModelParetoOptim
Multi criteria optimization of predicted surrogate models...
spotModel.predict
Model Prediction Interface This function is used to interface...
spotModel.train
Model Training Interface This function is used to interface...
spotNormalizeMatrix
Normalize design
spotNormalizeMatrix2
Normalize design
spotNormDesign
spotNormDesign
spotOcba
Optimal Computing Budget Allocation OCBA for SPOT
spotOptim
spotOptim: optim-like spot interface
spotOptimEs
spotOptimEs: optim-like ES interface
spotOptimInterface
Interface for Target Functions
spotOptimizationInterface
spotOptimizationInterface
spotOptimizationInterfaceMco
spotOptimizationInterfaceMco
spotOptimLHS
spotOptimLHS
SPOT-package
Sequential Parameter Optimization Toolbox in R
spotParetoOptMulti
DEPRECATED see 'spotModelParetoOptim'
spotPenalizeMissingValues
Penalize Missing Values
spotPlotBst
Plot Best Solution Found so far
spotPredictCoForrester
Meta Model Interface: Forrester's Co-Kriging
spotPredictDace
Meta Model Interface: DACE Kriging
spotPredictDice
Meta Model Interface: Dice Kriging
spotPredictEarth
Meta Model Interface: Multivariate Adaptive Regression Spline
spotPredictEsvm
Meta Model Interface: Support Vector Machine
spotPredictForrester
Meta Model Interface: Forrester's Kriging
spotPredictGausspr
Meta Model Interface: Gaussian Processes
spotPredictKrig
Meta Model Interface: Fields Kriging
spotPredictKsvm
Meta Model Interface: Support Vector Machine
spotPredictLm
Meta Model Interface: Linear Model
spotPredictLmFactor
Meta Model Interface: Linear model with factors for SPOT
spotPredictMCO
Meta Model Interface: Multi Criteria Modelling
spotPredictMlegp
Meta Model Interface: Maximum Likelihood Estimation for...
spotPredictMLP
Meta Model Interface: Multi-layer Perceptron
spotPredictNeuralnet
Meta Model Interface: Neural network
spotPredictOptMulti
DEPRECATED see 'spotModelOptim'
spotPredictQrnn
Meta Model Interface: Quantile Regression Neural Network
spotPredictRandomForest
Meta Model Interface: Random Forest A prediction model...
spotPredictRandomForestMlegp
Meta Model Interface: Random Forest combined with Mlegp A...
spotPredictTest
Meta Model Interface: Test
spotPredictTgp
Meta Model Interface: Treed Gaussian Processes
spotPredictTree
Meta Model Interface: Tree A prediction model based on rpart,...
spotPrepare
Prepares the configuration (spotConfig) for SPOT
spotPrepareData
Prepare Data for SPOT
spotPrepareDataAsMatrixC
Prepare Data As Matrix C
spotPrepareResult
Write Result File
spotPrint
Spot Print
spotReadBstFile
Read .bst File
spotReadRoi
Spot Read ROI
spotRepairMissingValues
Repair Missing Values
spotRepairMissingValuesCoKriging
Repair Missing Values
spotRepeats
Select repeats of design points, linearly increasing
spotRepeatsOcba
Select repeats of design points based on OCBA
spotReport3d
3d Plot of Meta Model - Report Function
spotReport3dMulti
3d Plot of Meta Model - Report Function
spotReportContour
Model Contour Plot - Report Function
spotReportContourMulti
Multi Objective Contour Plot
spotReportDefault
Default Report
spotReportEarth
Earth Report
spotReportMAMP
MAMP Model Report
spotReportMetaDefault
Default Report for Meta Runs
spotReportSAMP
SAMP Model Report
spotReportSens
Sensitivity Report
spotReportSensY
Sensitivity Report Helper Function
spotReverseNormalizeMatrix
Reverse Normalize
spotRgpTargetFunction
Target function for RGP / SPOT tuning
spotROI
Region Of Interest Constructor
spotSelectionCriteria
Model selection and error estimation
spotSeqDesignIncreaseMultTwo
Increase Sequential Design Repeats: Double
spotSeqDesignIncreasePlusOne
Increase Sequential Design Repeats Plus One
spotSExI2d
S-metric Expected Improvement SExI Infill Criterion
spotSmsEmoa
SMS-EMOA: S-Metric-Selection Evolutionary Multi-objective...
spotSmsEmoaKriging
SMS-EMOA: S-Metric-Selection Evolutionary Multi-objective...
spotStepAutoOpt
SPOT Step Auto Opt
spotStepInitial
SPOT Step: Initialize (First SPOT- Step)
spotStepMetaOpt
SPOT Step Meta
spotStepReport
SPOT Step Report
spotStepRunAlg
SPOT Step Algorithm Call
spotStepSequential
SPOT Step Sequential
spotSurf3d
spotSurf3d
spotSurfContour
spotSurfContour
spotVersion
Spot Version
spotWriteAroi
Spot Write Aroi
spotWriteBest
Spot Write Best
spotWriteDes
Spot Write Design
spotWriteLines
Spot Write Lines
spotWriteRes
Write Result File
spotWriteRoiFileForRepeats
write ROI for repeats
Testfunctions
Single objective test functions for SPOT

Files in this package

SPOT
SPOT/inst
SPOT/inst/demo03LmBranin
SPOT/inst/demo03LmBranin/demo03LmBranin.apd
SPOT/inst/demo03LmBranin/demo03LmBranin.conf
SPOT/inst/demo03LmBranin/demo03LmBranin.roi
SPOT/inst/demo06TreeSann
SPOT/inst/demo06TreeSann/demo06TreeSann.roi
SPOT/inst/demo06TreeSann/demo06TreeSann.conf
SPOT/inst/demo06TreeSann/demo06TreeSann.apd
SPOT/inst/demoMixedModelAnalysis
SPOT/inst/demoMixedModelAnalysis/glges02.bst
SPOT/inst/demoMixedModelAnalysis/glges02.res
SPOT/inst/demoMixedModelAnalysis/glges02.apd
SPOT/inst/demoMixedModelAnalysis/glges02.conf
SPOT/inst/demoMixedModelAnalysis/glges02.des
SPOT/inst/demoMixedModelAnalysis/glges02.roi
SPOT/inst/demoMixedModelAnalysis/glges01.conf
SPOT/inst/demoMixedModelAnalysis/glges01.roi
SPOT/inst/demoMixedModelAnalysis/glges01.apd
SPOT/inst/demoMixedModelAnalysis/glges02.aroi
SPOT/inst/CITATION
SPOT/inst/demo23RgpKtfg
SPOT/inst/demo23RgpKtfg/ktfgRgp001.roi
SPOT/inst/demo23RgpKtfg/spotAlgStartKtfgRgp.R
SPOT/inst/demo23RgpKtfg/ktfgRgp001.apd
SPOT/inst/demo23RgpKtfg/ktfgRgp002.apd
SPOT/inst/demo23RgpKtfg/ktfgRgp001.conf
SPOT/inst/demo23RgpKtfg/ktfgRgp002.conf
SPOT/inst/demo23RgpKtfg/ktfgRgp002.roi
SPOT/inst/demo14LmOptimSann
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.conf
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.apd
SPOT/inst/demo14LmOptimSann/demo14LmOptimSann.roi
SPOT/inst/demo10TgpSann
SPOT/inst/demo10TgpSann/demo10TgpSann.apd
SPOT/inst/demo10TgpSann/demo10TgpSann.roi
SPOT/inst/demo10TgpSann/demo10TgpSann.conf
SPOT/inst/demo02RandomForestBranin
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.conf
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.roi
SPOT/inst/demo02RandomForestBranin/demo02RandomForestBranin.apd
SPOT/inst/demo04MlegpBranin
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.roi
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.conf
SPOT/inst/demo04MlegpBranin/demo04MlegpBranin.apd
SPOT/inst/demo16EsBranin
SPOT/inst/demo16EsBranin/es1.conf
SPOT/inst/demo16EsBranin/es1.roi
SPOT/inst/demo16EsBranin/es1.apd
SPOT/inst/demo09MlegpSann
SPOT/inst/demo09MlegpSann/demo09MlegpSann.conf
SPOT/inst/demo09MlegpSann/demo09MlegpSann.apd
SPOT/inst/demo09MlegpSann/demo09MlegpSann.roi
SPOT/inst/demo17Rgp
SPOT/inst/demo17Rgp/rgp0001.apd
SPOT/inst/demo17Rgp/rgp0001.conf
SPOT/inst/demo17Rgp/rgp0001.roi
SPOT/inst/demo13RandomForestMlegpSann
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.apd
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.conf
SPOT/inst/demo13RandomForestMlegpSann/demo13RandomForestMlegpSann.roi
SPOT/inst/demo08LmSann
SPOT/inst/demo08LmSann/demo08LmSann.roi
SPOT/inst/demo08LmSann/demo08LmSann.apd
SPOT/inst/demo08LmSann/demo08LmSann.conf
SPOT/inst/demo07RandomForestSann
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.roi
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.apd
SPOT/inst/demo07RandomForestSann/demo07RandomForestSann.conf
SPOT/inst/demo05TgpBranin
SPOT/inst/demo05TgpBranin/demo05TgpBranin.roi
SPOT/inst/demo05TgpBranin/demo05TgpBranin.apd
SPOT/inst/demo05TgpBranin/demo05TgpBranin.conf
SPOT/inst/demo11Java
SPOT/inst/demo11Java/demo11Java.apd
SPOT/inst/demo11Java/demo11Java.conf
SPOT/inst/demo11Java/bin
SPOT/inst/demo11Java/bin/spotAlgStartOnePlusOneEsJava.R
SPOT/inst/demo11Java/bin/simpleOnePlusOneES.jar
SPOT/inst/demo11Java/bin/README.txt
SPOT/inst/demo11Java/demo11Java.roi
SPOT/inst/GUI
SPOT/inst/GUI/spotGui.jar
SPOT/inst/GUI/help.pdf
SPOT/inst/demo01TreeBranin
SPOT/inst/demo01TreeBranin/demo01TreeBranin.conf
SPOT/inst/demo01TreeBranin/demo01TreeBranin.apd
SPOT/inst/demo01TreeBranin/demo01TreeBranin.roi
SPOT/inst/doc
SPOT/inst/doc/index.html
SPOT/inst/doc/SPOT.pdf
SPOT/inst/doc/SPOTmanual.pdf
SPOT/inst/demo12Sann
SPOT/inst/demo12Sann/sann0001.conf
SPOT/inst/demo12Sann/sann0001.apd
SPOT/inst/demo12Sann/sann0001.roi
SPOT/NAMESPACE
SPOT/demo
SPOT/demo/spotDemo19MultiObjective.R
SPOT/demo/spotDemo11Java.R
SPOT/demo/spotDemo05TgpBranin.R
SPOT/demo/spotDemo22MixedModelMAMP.R
SPOT/demo/spotDemo18ForresterOptim.R
SPOT/demo/spotDemo12Sann.R
SPOT/demo/spotDemo09MlegpSann.R
SPOT/demo/spotDemo13RandomForestMlegpSann.R
SPOT/demo/spotDemo04MlegpBranin.R
SPOT/demo/spotDemo08LmSann.R
SPOT/demo/spotDemo03LmBranin.R
SPOT/demo/spotDemo14LmOptimSann.R
SPOT/demo/spotDemo01TreeBranin.R
SPOT/demo/00Index
SPOT/demo/spotDemo21MixedModelSAMP.R
SPOT/demo/spotDemo06TreeSann.R
SPOT/demo/spotDemo17Rgp.R
SPOT/demo/spotDemo07RandomForestSann.R
SPOT/demo/spotDemo20SurfacePlots.R
SPOT/demo/spotDemo16EsBranin.R
SPOT/demo/spotDemo02RandomForestBranin.R
SPOT/demo/spotDemo23RgpKtfg.R
SPOT/demo/spotDemo10TgpSann.R
SPOT/NEWS
SPOT/R
SPOT/R/spotCreateDesignFrF2.R
SPOT/R/spotPredictEnsembleMultiChoose.R
SPOT/R/spotFuncTools.R
SPOT/R/spotFuncStartMexicanHat.R
SPOT/R/spotEnsembleSingleSoftMax.R
SPOT/R/spotAlgStartEs.R
SPOT/R/spotReportSAMP.R
SPOT/R/spotPredictEnsembleMultiRank.R
SPOT/R/spotFuncStartSphere.R
SPOT/R/spotFuncStartBranin.R
SPOT/R/spotReport3d.R
SPOT/R/spotEnsembleSinglePOKER.R
SPOT/R/spotReportMetaDefault.R
SPOT/R/spotPredictEnsembleMultiAlternate.R
SPOT/R/spotCreateDesignFactors.R
SPOT/R/spotOptimizationFunctions.R
SPOT/R/spotCreateDesignLhd.R
SPOT/R/spotExpectedImprovement.R
SPOT/R/spotEnsembleSingleUCB1.R
SPOT/R/spotReportEarth.R
SPOT/R/spotPredictEnsembleMultiAverage.R
SPOT/R/spotRepeats.R
SPOT/R/spotModelSelection.R
SPOT/R/spotPredictDace.R
SPOT/R/spotReportMAMP.R
SPOT/R/spotEnsembleSingleRoundSearch.R
SPOT/R/spotRepairMissingValues.R
SPOT/R/spotAlgStartSmsEmoaGlg.R
SPOT/R/spotMcoSort.R
SPOT/R/spotModelParetoOptim.R
SPOT/R/spotFuncStartRastrigin.R
SPOT/R/spotPredictKrig.R
SPOT/R/spotPredictRandomForest.R
SPOT/R/spotPredictNeuralnet.R
SPOT/R/spotPredictKsvm.R
SPOT/R/spotPredictMlegp.R
SPOT/R/spotPredictEsvm.R
SPOT/R/spotPrepareData.R
SPOT/R/spotPredictCoForrester.R
SPOT/R/spotPredictTest.R
SPOT/R/spotReportContour.R
SPOT/R/spotCreateDesignLhs.R
SPOT/R/spotPredictGausspr.R
SPOT/R/spotTargetFunctions.R
SPOT/R/spotPredictEarth.R
SPOT/R/spotMeta.R
SPOT/R/spot.R
SPOT/R/spotCreateDesignLhsOpt.R
SPOT/R/spotSurf.R
SPOT/R/spotAlgStartEsGlg.R
SPOT/R/spotEnsembleFunctions.R
SPOT/R/spotStatistics.R
SPOT/R/spotPredictRandomForestMlegp.R
SPOT/R/sms_emoa.r
SPOT/R/spotPredictEnsembleMultiRankWeighted.R
SPOT/R/spotFuncStartSixHump.R
SPOT/R/spotOptim.R
SPOT/R/spotPredictQrnn.R
SPOT/R/spotGetOptions.R
SPOT/R/spotAlgStartRgp.R
SPOT/R/spotEnsembleSingleEpsGreedy.R
SPOT/R/spotReportDefault.R
SPOT/R/spotPredictHelpFunctions.R
SPOT/R/spotPredictTgp.R
SPOT/R/spotGaussianLandscapeGenerator.R
SPOT/R/spotPredictLm.R
SPOT/R/spotOptimEs.R
SPOT/R/spotPredictForrester.R
SPOT/R/spotFuncStartRosenbrock.R
SPOT/R/spotPredictMCO.R
SPOT/R/spotPredictTree.R
SPOT/R/spotSeqDesignIncreaseFunctions.R
SPOT/R/spotGui.R
SPOT/R/spotPredictLmFactor.R
SPOT/R/spotReportSens.R
SPOT/R/spotCreateDesignBasicDoe.R
SPOT/R/spotHelpFunctions.R
SPOT/R/spotEnsembleSingleBLAnorm.R
SPOT/R/spotGenerateSequentialDesign.R
SPOT/R/spotEnsembleSingleBLAbern.R
SPOT/R/spotAlgStartSann.R
SPOT/R/spotPlot.R
SPOT/R/spotPredictMLP.R
SPOT/R/spotOcba.R
SPOT/R/spotModelOptim.R
SPOT/R/spotPredictDice.R
SPOT/vignettes
SPOT/vignettes/SPOT.Rnw
SPOT/MD5
SPOT/java
SPOT/java/spotGui
SPOT/java/spotGui/icon_check_unknown.gif
SPOT/java/spotGui/icon_check_valid.gif
SPOT/java/spotGui/icon_tab_algorithm.png
SPOT/java/spotGui/temp.gif
SPOT/java/spotGui/tarFuncGenerator.java
SPOT/java/spotGui/fileIO.java
SPOT/java/spotGui/icon_tab_conf.gif
SPOT/java/spotGui/icon_tab_run.gif
SPOT/java/spotGui/icon_tab_analyse.gif
SPOT/java/spotGui/spotGuiMain.java
SPOT/java/spotGui/icon_tab_roi.gif
SPOT/java/spotGui/icon_tab_welcome.gif
SPOT/java/spotGui/hlp.java
SPOT/java/spotGui/icon_check_invalid.gif
SPOT/java/spotGui/spotOfficial.jpg
SPOT/java/spotGui/icon_logo.png
SPOT/java/OnePlusOneESJava
SPOT/java/OnePlusOneESJava/de
SPOT/java/OnePlusOneESJava/de/fhkoeln
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/algorithms
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/algorithms/SimpleOnePlusOneES.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/Ball.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/IObjectiveFunction.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/ExpSurface.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/HyperEllipsoide.java
SPOT/java/OnePlusOneESJava/de/fhkoeln/spot/objectivefunctions/Rosenbrock.java
SPOT/DESCRIPTION
SPOT/man
SPOT/man/daceStartParameters.Rd
SPOT/man/spotHlpF.norm.Rd
SPOT/man/spotModel.train.Rd
SPOT/man/spotMcoCrowdTournament.Rd
SPOT/man/spotPredictRandomForestMlegp.Rd
SPOT/man/spotEnsembleSingleUCB1.Rd
SPOT/man/spotMcoSort.Rd
SPOT/man/spotPredictCoForrester.Rd
SPOT/man/spotStepReport.Rd
SPOT/man/spotRepairMissingValuesCoKriging.Rd
SPOT/man/SPOT-package.Rd
SPOT/man/spotGetRawResData.Rd
SPOT/man/spotEnsembleMinimum.Rd
SPOT/man/spotPrepareData.Rd
SPOT/man/spotGui.Rd
SPOT/man/spotEnsembleStatsMin.Rd
SPOT/man/spotHelpBslash.Rd
SPOT/man/spotRgpTargetFunction.Rd
SPOT/man/spotEnsembleSingleEpsGreedy.Rd
SPOT/man/spotGlgCreateN.Rd
SPOT/man/spotEnsembleSingleRoundSearch.Rd
SPOT/man/corrnoisygauss.Rd
SPOT/man/spotOptimizationInterface.Rd
SPOT/man/spotGetRawDataMatrixB.Rd
SPOT/man/spotAlgStartEsVar.Rd
SPOT/man/spotSmsEmoaKriging.Rd
SPOT/man/spotPredictRandomForest.Rd
SPOT/man/spotAlgEsIndividualInitial.Rd
SPOT/man/spotRepeatsOcba.Rd
SPOT/man/spotInfillLcbSingle.Rd
SPOT/man/repmat.Rd
SPOT/man/spotPredictEsvm.Rd
SPOT/man/spotReportEarth.Rd
SPOT/man/corrkriging.Rd
SPOT/man/spotGlgCreateRotSearched.Rd
SPOT/man/daceBuilder.Rd
SPOT/man/forrCoRegPredictor.Rd
SPOT/man/spotAlgEsDominantReco.Rd
SPOT/man/spotInfillSD.Rd
SPOT/man/spotGlgCreateRot.Rd
SPOT/man/spotEnsembleSummedRankWeighted.Rd
SPOT/man/spotInfillHyperVolume.Rd
SPOT/man/spotNormalizeMatrix2.Rd
SPOT/man/spotFuncStartSphere.Rd
SPOT/man/spotReport3d.Rd
SPOT/man/spotPrepareDataAsMatrixC.Rd
SPOT/man/spotModel.predict.Rd
SPOT/man/corrspherical.Rd
SPOT/man/spotReportMAMP.Rd
SPOT/man/spotPredictQrnn.Rd
SPOT/man/corrspline.Rd
SPOT/man/forrCoModel.Rd
SPOT/man/spotModelOptim.Rd
SPOT/man/spotReportSAMP.Rd
SPOT/man/spotHlpF.norminv.Rd
SPOT/man/spotFuncStartRastrigin.Rd
SPOT/man/forrBuilder.Rd
SPOT/man/spotParetoOptMulti.Rd
SPOT/man/daceObjfunc.Rd
SPOT/man/spotModelDescentLm.Rd
SPOT/man/spotGetAllRepeats.Rd
SPOT/man/Testfunctions.Rd
SPOT/man/spotAlgEsInterReco.Rd
SPOT/man/spotSelectionCriteria.Rd
SPOT/man/spotAlgEsGetSuccessRate.Rd
SPOT/man/spotNormalizeMatrix.Rd
SPOT/man/correxpg.Rd
SPOT/man/spotInstAndLoadPackages.Rd
SPOT/man/spotEnsembleMultiRank.Rd
SPOT/man/spotMetaFlattenFbsRow.Rd
SPOT/man/spotStepAutoOpt.Rd
SPOT/man/spotPredictTree.Rd
SPOT/man/spotForceFactorDesign.Rd
SPOT/man/spotReverseNormalizeMatrix.Rd
SPOT/man/spotWriteAroi.Rd
SPOT/man/corrcubic.Rd
SPOT/man/spotEnsembleSingleSoftMax.Rd
SPOT/man/correxp.Rd
SPOT/man/spotPredictDice.Rd
SPOT/man/spotAlgStartSann.Rd
SPOT/man/spotGenerateSequentialDesign.Rd
SPOT/man/spotStepSequential.Rd
SPOT/man/dacePrepareFit.Rd
SPOT/man/spotAlgEs.Rd
SPOT/man/spotEnsembleSubdesigns.Rd
SPOT/man/spotAlgStartRgp.Rd
SPOT/man/spotWriteLines.Rd
SPOT/man/spotGlgEval.Rd
SPOT/man/spotReportContour.Rd
SPOT/man/spotEnsembleSingleBLAbern.Rd
SPOT/man/forrCoBuilder.Rd
SPOT/man/forrRegPredictor.Rd
SPOT/man/spotPredictMLP.Rd
SPOT/man/spotPrepare.Rd
SPOT/man/daceFixTheta.Rd
SPOT/man/spotVersion.Rd
SPOT/man/spotAlgEsStratMutation.Rd
SPOT/man/spotEnsembleMultiChoose.Rd
SPOT/man/spotOptimizationInterfaceMco.Rd
SPOT/man/spotPredictMCO.Rd
SPOT/man/spotInfillProbImp.Rd
SPOT/man/regpoly2.Rd
SPOT/man/spotPredictLm.Rd
SPOT/man/spotMcoSelectionHypervol.Rd
SPOT/man/spotCreateDesignFactors.Rd
SPOT/man/spotReportMetaDefault.Rd
SPOT/man/spotSurfContour.Rd
SPOT/man/spotNormDesign.Rd
SPOT/man/spotPrepareResult.Rd
SPOT/man/spotPredictKrig.Rd
SPOT/man/spotPredictForrester.Rd
SPOT/man/spotPredictTest.Rd
SPOT/man/spotInfillExpImp.Rd
SPOT/man/spotSmsEmoa.Rd
SPOT/man/forrRegLikelihood.Rd
SPOT/man/spotOptim.Rd
SPOT/man/spotPredictDace.Rd
SPOT/man/spotPredictNeuralnet.Rd
SPOT/man/spotInfillSExI2d.Rd
SPOT/man/spotStepMetaOpt.Rd
SPOT/man/corrnoisykriging.Rd
SPOT/man/spotEnsembleMultiAlternate.Rd
SPOT/man/spotOcba.Rd
SPOT/man/forrReintPredictor.Rd
SPOT/man/spotAlgEsMarriageWithReplace.Rd
SPOT/man/spotModel.func.Rd
SPOT/man/spotModelParetoOptim.Rd
SPOT/man/spotFuncStartSixHump.Rd
SPOT/man/spotPredictGausspr.Rd
SPOT/man/spotRepairMissingValues.Rd
SPOT/man/spotStepRunAlg.Rd
SPOT/man/regpoly1.Rd
SPOT/man/spotROI.Rd
SPOT/man/forrCoLikelihood.Rd
SPOT/man/spotFeedback.Rd
SPOT/man/spotEnsembleSingleBLAnorm.Rd
SPOT/man/spotGetRepeats.Rd
SPOT/man/spotWriteRes.Rd
SPOT/man/spotCalcNoise.Rd
SPOT/man/spotInfillLcbMulti.Rd
SPOT/man/spotCreateDesignLhs.Rd
SPOT/man/spotAlgEsHps.Rd
SPOT/man/spotGlgInit.Rd
SPOT/man/spotGlgInitN.Rd
SPOT/man/spotOptimEs.Rd
SPOT/man/spotAlgEsInterRecoBeSw02.Rd
SPOT/man/spotGetMergedDataMatrixB.Rd
SPOT/man/spotAlgStartSannVar.Rd
SPOT/man/spotPredictOptMulti.Rd
SPOT/man/spotPenalizeMissingValues.Rd
SPOT/man/spotEnsembleMultiAverage.Rd
SPOT/man/spotCallCoFunction.Rd
SPOT/man/spotAlgStartEs.Rd
SPOT/man/daceGetFit.Rd
SPOT/man/dacePredictor.Rd
SPOT/man/spotStepInitial.Rd
SPOT/man/spotForceFactorX.Rd
SPOT/man/spotAlgStartSmsEmoaGlg.Rd
SPOT/man/spotInvChisq.Rd
SPOT/man/spotReportContourMulti.Rd
SPOT/man/spotAlgEsInitParentPop.Rd
SPOT/man/daceLikelihood.Rd
SPOT/man/spotFuncStartMexicanHat.Rd
SPOT/man/spotInfillLcbHyperVolume.Rd
SPOT/man/spotSeqDesignIncreaseMultTwo.Rd
SPOT/man/spotPredictEarth.Rd
SPOT/man/spotGetOptions.Rd
SPOT/man/spotPredictTgp.Rd
SPOT/man/spotAlgEsQuickTest.Rd
SPOT/man/spotOptimLHS.Rd
SPOT/man/spotEnsembleMultiRankWeighted.Rd
SPOT/man/spotWriteBest.Rd
SPOT/man/daceEvalFit.Rd
SPOT/man/spotAlgEsTermination.Rd
SPOT/man/spotReportSensY.Rd
SPOT/man/spotWriteRoiFileForRepeats.Rd
SPOT/man/spotPrint.Rd
SPOT/man/spotMcoTournament.Rd
SPOT/man/forrIF.Rd
SPOT/man/spotExiPsi.Rd
SPOT/man/spot.Rd
SPOT/man/spotInitializePredictor.Rd
SPOT/man/spotRepeats.Rd
SPOT/man/spotPredictKsvm.Rd
SPOT/man/spotGlgEvalN.Rd
SPOT/man/spotSeqDesignIncreasePlusOne.Rd
SPOT/man/corrgauss.Rd
SPOT/man/spotWriteDes.Rd
SPOT/man/spotCreateDesignLhd.Rd
SPOT/man/spotFuncStartRosenbrock.Rd
SPOT/man/spotCreateDesignFrF2.Rd
SPOT/man/print.Rd
SPOT/man/spotEnsembleModelBuilding.Rd
SPOT/man/spotReportSens.Rd
SPOT/man/spotAlgEsSelection.Rd
SPOT/man/spotCreateDesignLhsOpt.Rd
SPOT/man/spotSExI2d.Rd
SPOT/man/spotAlgStartEsGlg.Rd
SPOT/man/spotCodeFormulas.Rd
SPOT/man/spotEnsembleSinglePOKER.Rd
SPOT/man/spotPlotBst.Rd
SPOT/man/spotReadBstFile.Rd
SPOT/man/spotGlgCreate.Rd
SPOT/man/spotAlgEsObjMutation.Rd
SPOT/man/spotOptimInterface.Rd
SPOT/man/spotEnsembleStatsSd.Rd
SPOT/man/spotPredictLmFactor.Rd
SPOT/man/spotFuncStartBranin.Rd
SPOT/man/spotReadRoi.Rd
SPOT/man/spotReport3dMulti.Rd
SPOT/man/spotEnsembleSummedRank.Rd
SPOT/man/spotAlgEsMarriage.Rd
SPOT/man/spotEnsembleModelEvaluate.Rd
SPOT/man/spotFuncStartDisBranin.Rd
SPOT/man/spotSurf3d.Rd
SPOT/man/regpoly0.Rd
SPOT/man/spotPredictMlegp.Rd
SPOT/man/corrlin.Rd
SPOT/man/spotGlgCore.Rd
SPOT/man/predict.forr.Rd
SPOT/man/spotReportDefault.Rd
SPOT/man/spotCreateDesignBasicDoe.Rd
SPOT/man/spotGlgEvalRot.Rd
SPOT/.Rinstignore