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SRTsim: Simulator for Spatially Resolved Transcriptomics
An independent, reproducible, and flexible Spatially Resolved Transcriptomics (SRT) simulation framework that can be used to facilitate the development of SRT analytical methods for a wide variety of SRT-specific analyses. It utilizes spatial localization information to simulate SRT expression count data in a reproducible and scalable fashion. Two major simulation schemes are implemented in 'SRTsim': reference-based and reference-free.
Getting started
Browse package contents
Package details |
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| Author | Jiaqiang Zhu [aut, ctb, cre] (<https://orcid.org/0000-0002-1455-0041>), Lulu Shang [aut] (<https://orcid.org/0000-0002-2480-3065>), Xiang Zhou [aut] (<https://orcid.org/0000-0002-4331-7599>) |
| Maintainer | Jiaqiang Zhu <jiaqiang@umich.edu> |
| License | GPL (>= 3) |
| Version | 0.99.6 |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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