compareSRT: Summarize metrics for reference data and synthetic data
In SRTsim: Simulator for Spatially Resolved Transcriptomics

compareSRT

R Documentation

Summarize metrics for reference data and synthetic data

Description

Summarize metrics for reference data and synthetic data

Usage

compareSRT(simsrt)

Arguments

simsrt

A SRTsim object

Value

Returns an object with summarized metrics

Examples


## Create a simSRT object
toySRT  <- createSRT(count_in=toyData$toyCount,loc_in = toyData$toyInfo)
set.seed(1)
## Estimate model parameters for data generation
toySRT <- srtsim_fit(toySRT,sim_schem="tissue")
## Generate synthetic data with estimated parameters
toySRT <- srtsim_count(toySRT)
## Compute metrics 
toySRT   <- compareSRT(toySRT)

SRTsim documentation built on Jan. 13, 2023, 5:12 p.m.