simCounts: Access synthetic count matrix
In SRTsim: Simulator for Spatially Resolved Transcriptomics

simCounts

R Documentation

Access synthetic count matrix

Description

Access synthetic count matrix

Usage

simCounts(x)

Arguments

`x`	SRTsim object

Value

Returns a synthetic count matrix

Examples


## Create a simSRT object
toySRT  <- createSRT(count_in=toyData$toyCount,loc_in = toyData$toyInfo)
set.seed(1)
## Estimate model parameters for data generation
toySRT <- srtsim_fit(toySRT,sim_schem="tissue")
## Generate synthetic data with estimated parameters
toySRT <- srtsim_count(toySRT)
simCounts(toySRT)[1:3,1:3]

SRTsim documentation built on Jan. 13, 2023, 5:12 p.m.