subsetSRT: Subset SRT object based on domain labels of interest
In SRTsim: Simulator for Spatially Resolved Transcriptomics
subsetSRT R Documentation
Subset SRT object based on domain labels of interest
Description
Subset SRT object based on domain labels of interest
Usage
subsetSRT(simsrt, sel_label = NULL)
Arguments
simsrt
A SRTsim object
sel_label
A vector of selected domain labels used for the data generation
Value
Returns a spatialExperiment-based object
Examples
## Create a simSRT object
toySRT <- createSRT(count_in=toyData$toyCount,loc_in = toyData$toyInfo)
set.seed(1)
## Only Keep the Spatial Locations labelled as "A" in the reference data
subtoySRT <- subsetSRT(toySRT,sel_label = "A")
SRTsim documentation built on Sept. 11, 2024, 6:54 p.m.
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| subsetSRT | R Documentation |
Subset SRT object based on domain labels of interest
Description
Subset SRT object based on domain labels of interest
Usage
subsetSRT(simsrt, sel_label = NULL)
Arguments
simsrt |
A SRTsim object |
sel_label |
A vector of selected domain labels used for the data generation |
Value
Returns a spatialExperiment-based object
Examples
## Create a simSRT object
toySRT <- createSRT(count_in=toyData$toyCount,loc_in = toyData$toyInfo)
set.seed(1)
## Only Keep the Spatial Locations labelled as "A" in the reference data
subtoySRT <- subsetSRT(toySRT,sel_label = "A")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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