SeqKat: Detection of Kataegis
Version 0.0.4

Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. SeqKat reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Upon publication of the paper describing the methods used in this package, a reference will be added here.

Package details

AuthorFouad Yousif, Xihui Lin, Fan Fan, Christopher Lalansingh
Date of publication2017-06-25 07:10:11 UTC
MaintainerPaul C. Boutros <[email protected]>
LicenseGPL-2
Version0.0.4
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SeqKat")

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SeqKat documentation built on June 25, 2017, 9:03 a.m.