SeqKat: Detection of Kataegis
Version 0.0.6

Kataegis is a localized hypermutation occurring when a region is enriched in somatic SNVs. Kataegis can result from multiple cytosine deaminations catalyzed by the AID/APOBEC family of proteins. This package contains functions to detect kataegis from SNVs in BED format. This package reports two scores per kataegic event, a hypermutation score and an APOBEC mediated kataegic score. Yousif, F. et al.; The Origins and Consequences of Localized and Global Somatic Hypermutation; Biorxiv 2018 .

Package details

AuthorFouad Yousif, Xihui Lin, Fan Fan, Christopher Lalansingh
Date of publication2018-03-29 21:57:09 UTC
MaintainerPaul C. Boutros <[email protected]>
LicenseGPL-2
Version0.0.6
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("SeqKat")

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SeqKat documentation built on April 1, 2018, 12:13 p.m.