Files in SeqKat
Detection of Kataegis

inst
inst/extdata
inst/extdata/trinucleotide_hg38_whole_genome.txt
inst/extdata/length_hg38_chr.txt
inst/extdata/length_hg19_chr.txt
inst/extdata/tn_count.txt
inst/extdata/test
inst/extdata/test/length_hg19_chr_test.txt
inst/extdata/test/PD4120a-chr4-1-2000000_test_snvs.bed
inst/extdata/test/ref
inst/extdata/test/ref/chr4.fa
inst/extdata/test/ref/chr17.fa
inst/extdata/test/ref/chr2.fa
inst/extdata/test/ref/chr3.fa
inst/extdata/test/ref/chr18.fa
inst/extdata/test/ref/chr9.fa
inst/extdata/test/ref/chr6.fa
inst/extdata/test/ref/chr12.fa
inst/extdata/test/ref/chr1.fa
inst/extdata/test/ref/chr19.fa
inst/extdata/test/ref/chr5.fa
inst/extdata/test/ref/chr10.fa
inst/extdata/test/ref/chr16.fa
inst/extdata/test/ref/chr24.fa
inst/extdata/test/ref/chr23.fa
inst/extdata/test/ref/chr13.fa
inst/extdata/test/ref/chr21.fa
inst/extdata/test/ref/chr15.fa
inst/extdata/test/ref/chr20.fa
inst/extdata/test/ref/chr14.fa
inst/extdata/test/ref/chr11.fa
inst/extdata/test/ref/chr7.fa
inst/extdata/test/ref/chr8.fa
inst/extdata/test/ref/chr22.fa
inst/doc
inst/doc/vignette.pdf inst/doc/vignette.Rmd
exec
exec/generate.trinucleotide.counts
tests
tests/testthat.R
tests/testthat
tests/testthat/test-seqkat.R
src
src/Makevars
src/cget_trinucleotide_counts.cpp
src/SeqKat_init.c
src/cget_nucleotide_chunk_counts.cpp
src/cpp_get_context.cpp
src/Makevars.win
src/RcppExports.cpp
NAMESPACE
R
R/get.tn.R R/seqkat.R R/combine.table.R R/get.pair.R R/final.score.R R/RcppExports.R R/test.kataegis.R R/get.exprobntcx.R R/get.context.R R/get.trinucleotide.counts.R R/get.toptn.R R/get.nucleotide.chunk.counts.R
vignettes
vignettes/vignette.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/combine.table.Rd man/get.nucleotide.chunk.counts.Rd man/get.pair.Rd man/seqkat.Rd man/get.toptn.Rd man/final.score.Rd man/get.trinucleotide.counts.Rd man/get.tn.Rd man/test.kataegis.Rd man/get.exprobntcx.Rd man/get.context.Rd
SeqKat documentation built on June 25, 2017, 9:03 a.m.