get.toptn: Get Top Trinucleotides

In SeqKat: Detection of Kataegis

Description

Generate a tri-nucleotide summary for each sliding window

Usage

get.toptn(somatic.subset, chr, start.bp, end.bp, ref.dir)

Arguments

somatic.subset	Data frame of somatic variants subset for a specific chromosome
chr	Chromosome
start.bp	Starting position
end.bp	Ending position
ref.dir	Path to a directory containing the reference genome.

Author(s)

Fan Fan

Fouad Yousif

Examples

## Not run: 
get.toptn(somatic.subset, chr, start.bp, end.bp, ref.dir)

## End(Not run)

SeqKat documentation built on March 13, 2020, 1:59 a.m.