get.toptn: Get Top Trinucleotides

Description Usage Arguments Author(s) Examples

View source: R/get.toptn.R

Description

Generate a tri-nucleotide summary for each sliding window

Usage

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get.toptn(somatic.subset, chr, start.bp, end.bp, ref.dir)

Arguments

somatic.subset

Data frame of somatic variants subset for a specific chromosome

chr

Chromosome

start.bp

Starting position

end.bp

Ending position

ref.dir

Path to a directory containing the reference genome.

Author(s)

Fan Fan

Fouad Yousif

Examples

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## Not run: 
get.toptn(somatic.subset, chr, start.bp, end.bp, ref.dir)

## End(Not run)

SeqKat documentation built on March 13, 2020, 1:59 a.m.