get.tn: Get Trinucleotides

Description Usage Arguments Author(s) Examples

View source: R/get.tn.R

Description

Count the frequencies of 32 trinucleotide in a region respectively

Usage

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get.tn(chr, start.bp, end.bp, ref.dir)

Arguments

chr

Chromosome

start.bp

Starting position

end.bp

Ending position

ref.dir

Path to a directory containing the reference genome.

Author(s)

Fan Fan

Examples

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example.ref.dir <- paste0(
	path.package("SeqKat"),
	"/extdata/test/ref/"
	);
get.tn(chr=4, start.bp=1, end.bp=-1, example.ref.dir)

SeqKat documentation built on March 13, 2020, 1:59 a.m.