Description Usage Arguments Author(s) Examples
Assigns hypermutation score (hm.score) and kataegic score (k.score)
1 | final.score(test.table, cutoff, somatic, output.name)
|
test.table |
Data frame of kataegis test scores |
cutoff |
The minimum hypermutation score used to classify the windows in the sliding binomial test as significant windows. The score is calculated per window as follows: -log10(binomial test p-value). Recommended value: 5 |
somatic |
Data frame of somatic variants |
output.name |
Name of the generated output directory. |
Fan Fan
Fouad Yousif
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 | load(
paste0(
path.package("SeqKat"),
"/extdata/test/somatic.rda"
)
);
load(
paste0(
path.package("SeqKat"),
"/extdata/test/test.table.rda"
)
);
final.score(
test.table,
5,
somatic,
tempdir()
);
|
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