get.context: Get Context
In SeqKat: Detection of Kataegis
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Gets the 5' and 3' neighboring bases to the mutated base
Usage
1
Arguments
file
Reference files directory
start
The position of the mutation gene
Value
The trinucleotide context.
Author(s)
Fouad Yousif
Fan Fan
Examples
1
2
3
4
5
example.ref.dir <- paste0(
path.package("SeqKat"),
"/extdata/test/ref/"
);
get.context(file.path(example.ref.dir, 'chr4.fa'), c(1582933, 1611781))
SeqKat documentation built on March 13, 2020, 1:59 a.m.
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Description Usage Arguments Value Author(s) Examples
Description
Gets the 5' and 3' neighboring bases to the mutated base
Usage
1 |
Arguments
file |
Reference files directory |
start |
The position of the mutation gene |
Value
The trinucleotide context.
Author(s)
Fouad Yousif
Fan Fan
Examples
1 2 3 4 5 | example.ref.dir <- paste0(
path.package("SeqKat"),
"/extdata/test/ref/"
);
get.context(file.path(example.ref.dir, 'chr4.fa'), c(1582933, 1611781))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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