get.context: Get Context

Description Usage Arguments Value Author(s) Examples

Description

Gets the 5' and 3' neighboring bases to the mutated base

Usage

1

Arguments

file

Reference files directory

start

The position of the mutation gene

Value

The trinucleotide context.

Author(s)

Fouad Yousif

Fan Fan

Examples

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example.ref.dir <- paste0(
	path.package("SeqKat"),
	"/extdata/test/ref/"
	);
get.context(file.path(example.ref.dir, 'chr4.fa'), c(1582933, 1611781))

SeqKat documentation built on March 13, 2020, 1:59 a.m.