| combine.table | Combine Table | 
| final.score | Final Score | 
| get.context | Get Context | 
| get.exprobntcx | get.exprobntcx | 
| get.nucleotide.chunk.counts | Get Nucleotide Chunk Counts | 
| get.pair | Get Pair | 
| get.tn | Get Trinucleotides | 
| get.toptn | Get Top Trinucleotides | 
| get.trinucleotide.counts | Get Trinucleotide Counts | 
| seqkat | SeqKat | 
| test.kataegis | Test Kataegis | 
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