API for SlimR
Adaptive Machine Learning-Powered, Context-Matching Tool for Single-Cell and Spatial Transcriptomics Annotation
| Global functions | |
|---|---|
| .apply_umap_smoothing | Man page Source code |
| .compute_aucell_scores | Man page Source code |
| .compute_weighted_scores | Man page Source code |
| .onAttach | Source code |
| Cellmarker2 | Man page |
| Cellmarker2_raw | Man page |
| Cellmarker2_table | Man page |
| Celltype_Annotation | Man page Source code |
| Celltype_Annotation_Combined | Man page Source code |
| Celltype_Annotation_Features | Man page Source code |
| Celltype_Annotation_Heatmap | Man page Source code |
| Celltype_Annotation_PerCell | Man page Source code |
| Celltype_Calculate | Man page Source code |
| Celltype_Calculate_PerCell | Man page Source code |
| Celltype_Verification | Man page Source code |
| Celltype_Verification_PerCell | Man page Source code |
| Celltype_annotation_Cellmarker2 | Man page Source code |
| Celltype_annotation_Excel | Man page Source code |
| Celltype_annotation_PanglaoDB | Man page Source code |
| Celltype_annotation_Seurat | Man page Source code |
| Markers_filter_Cellmarker2 | Man page Source code |
| Markers_filter_PanglaoDB | Man page Source code |
| Markers_list_PCTAM | Man page |
| Markers_list_PCTIT | Man page |
| Markers_list_TCellSI | Man page |
| Markers_list_scIBD | Man page |
| PanglaoDB | Man page |
| PanglaoDB_raw | Man page |
| PanglaoDB_table | Man page |
| Parameter_Calculate | Man page Source code |
| Read_excel_markers | Man page Source code |
| Read_seurat_markers | Man page Source code |
| calculate_cluster_variability | Man page Source code |
| calculate_expression | Man page Source code |
| calculate_expression_skewness | Man page Source code |
| calculate_probability | Man page Source code |
| compute_adaptive_parameters | Man page Source code |
| estimate_batch_effect | Man page Source code |
| extract_dataset_features | Man page Source code |
| percell_workflow | Man page |
| plot.pheatmap | Man page Source code |
