Files in SlimR

Machine Learning-Assisted, Marker-Based Tool for Single-Cell and Spatial Transcriptomics Annotation

NEWS.md README.md R/Celltype_annotation_PanglaoDB.R R/Read_excel_markers.R R/Celltype_annotation_Seurat.R R/Database_Markers_list_PCTAM.R R/Expression_calculate.R R/Database_Cellmarker2_table.R R/Database_Cellmarker2_raw.R R/Celltype_Annotation_Combined.R R/Database_Markers_list_PCTIT.R R/onattach.R R/Celltype_Calculate.R R/Celltype_annotation_Excel.R R/Database_Markers_list_scIBD.R R/Celltype_annotation_Cellmarker2.R R/Celltype_Verification.R R/Celltype_Annotation.R R/Database_Cellmarker2.R R/Probability_calculate.R R/Database_PanglaoDB_table.R R/Celltype_Annotation_Heatmap.R R/Markers_filter_PanglaoDB.R R/Read_seurat_markers.R R/Database_Markers_list_TCellSI.R R/globals.R R/Probability_parameter.R R/Celltype_Annotation_Features.R R/Database_PanglaoDB_raw.R R/Database_PanglaoDB.R R/Markers_filter_Cellmarker2.R man/Parameter_Calculate.Rd man/predict_optimal_parameters.Rd man/Celltype_Calculate.Rd man/Celltype_Annotation_Heatmap.Rd man/train_parameter_model.Rd man/Markers_filter_PanglaoDB.Rd man/Markers_list_scIBD.Rd man/PanglaoDB_raw.Rd man/Markers_list_PCTAM.Rd man/Celltype_Verification.Rd man/generate_training_data.Rd man/PanglaoDB_table.Rd man/Read_seurat_markers.Rd man/Celltype_annotation_Seurat.Rd man/calculate_cluster_variability.Rd man/Markers_list_PCTIT.Rd man/Cellmarker2.Rd man/Read_excel_markers.Rd man/postprocess_parameters.Rd man/Markers_filter_Cellmarker2.Rd man/calculate_expression.Rd man/estimate_batch_effect.Rd man/Celltype_annotation_Excel.Rd man/extract_dataset_features.Rd man/Celltype_annotation_Cellmarker2.Rd man/calculate_expression_skewness.Rd man/Markers_list_TCellSI.Rd man/calculate_probability.Rd man/Celltype_Annotation_Combined.Rd man/Celltype_Annotation.Rd man/PanglaoDB.Rd man/Cellmarker2_table.Rd man/Celltype_annotation_PanglaoDB.Rd man/Celltype_Annotation_Features.Rd man/Cellmarker2_raw.Rd