API for TransProR
Analysis and Visualization of Multi-Omics Data

Global functions
%>% Man page
.onAttach Source code
Combat_Normal Man page Source code
Contrast_Venn Man page Source code
DESeq2_analyze Man page Source code
Wilcoxon_analyze Man page Source code
add_boxplot Man page Source code
add_new_tile_layer Man page Source code
adjust_alpha_scale Man page Source code
adjust_color_tone Man page Source code
adjust_export_pathway Man page Source code
all_degs_venn Man page
circos_fruits Man page Source code
combat_tumor Man page Source code
compare_merge Man page Source code
create_base_plot Man page Source code
deg_filter Man page Source code
drawLegends Man page Source code
edgeR_analyze Man page Source code
enrich_circo_bar Man page Source code
enrich_polar_bubble Man page Source code
enrichment_circlize Man page Source code
enrichment_spiral_plots Man page Source code
extract_descriptions_counts Man page Source code
extract_ntop_pathways Man page Source code
extract_positive_pathways Man page Source code
facet_density_foldchange Man page Source code
filter_diff_genes Man page Source code
four_degs_venn Man page Source code
gather_graph_edge Man page Source code
gather_graph_node Man page Source code
gene_color Man page Source code
gene_highlights Man page Source code
gene_map_pathway Man page Source code
get_gtex_exp Man page Source code
get_tcga_exp Man page Source code
gtree Man page
highlight_by_node Man page Source code
highlight_genes Man page Source code
limma_analyze Man page Source code
log_transform Man page Source code
merge_density_foldchange Man page Source code
merge_gtex_tcga Man page Source code
merge_id_position Man page Source code
merge_method_color Man page Source code
new_ggraph Man page Source code
pathway_count Man page Source code
pathway_description Man page Source code
prep_deseq2 Man page Source code
prep_edgeR Man page Source code
prep_limma Man page Source code
prep_wilcoxon Man page Source code
process_heatdata Man page Source code
seek_gtex_organ Man page Source code
selectPathways Man page Source code
spiral_newrle Man page Source code
TransProR documentation built on April 4, 2025, 3:16 a.m.