Files in TransProR
Analysis and Visualization of Multi-Omics Data
MD5
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/GetTcgaExp.R
R/SeekGtexOrgan.R
R/CombatTumor.R
R/EnrichmentSpiralize.R
R/LogTransform.R
R/utils-pipe.R
R/WilcoxonAnalyze.R
R/ProcessHeatdata.R
R/EdgeRAnalyze.R
R/EnrichPolarBubble.R
R/GeneColor.R
R/PathwayDescription.R
R/GeneMapPathway.R
R/MergeIDPosition.R
R/data.R
R/HighlightByNode.R
R/CircosFruits.R
R/CombatNormal.R
R/NewGgraph.R
R/AdjustAlphaScale.R
R/HighlightGenes.R
R/MergeDensityFoldchange.R
R/DESeq2Analyze.R
R/MergeMethodColor.R
R/FilterDiffGenes.R
R/LimmaAnalyze.R
R/PrepLimma.R
R/FacetDensityFoldchange.R
R/GatherGraphEdge.R
R/GetGtexExp.R
R/PrepEdgeR.R
R/MergeGtexTcga.R
R/FourDegsVenn.R
R/EnrichCirclize.R
R/PathwayCount.R
R/zzz.R
R/CompareMerge.R
R/PrepDeseq2.R
R/EnrichCircoBar.R
R/GeneHighlights.R
R/Contrast_Venn.R
R/GatherGraphNode.R
R/PrepWilcoxon.R
inst/doc/TransProR.Rmd
inst/doc/TransProR.html
inst/extdata/DEG_deseq2_test.rds
inst/extdata/DEG_limma_voom_test.rds
inst/extdata/DEG_edgeR_test.rds
inst/extdata/gtex_gene_expected_count_test
inst/extdata/removebatch_SKCM_Skin_TCGA_exp_tumor_test.rds
inst/extdata/SKCM_Skin_TCGA_exp_normal_test.rds
inst/extdata/Diff_deseq2.rds
inst/extdata/TCGA-SKCM.GDC_phenotype_test.tsv
inst/extdata/selected_genes_deseq2.rds
inst/extdata/combined_df.rds
inst/extdata/p_tree_test.rds
inst/extdata/TCGA-SKCM.htseq_counts_test.tsv
inst/extdata/Wilcoxon_rank_sum_testoutRst_test.rds
inst/extdata/ascii_art.txt
inst/extdata/removebatch_SKCM_Skin_Normal_TCGA_GTEX_count_test.rds
inst/extdata/tree_plot.rds
inst/extdata/TCGA_gencode.v22.annotation.gene.probeMap_test
inst/extdata/all_count_exp_test.csv
inst/extdata/Skin_SKCM_Gtex_test.rds
inst/extdata/SKCM_Skin_TCGA_exp_tumor_test.rds
inst/extdata/gtex_probeMap_gencode.v23.annotation.gene.probemap_test
inst/extdata/DEG_deseq2.rds
inst/extdata/GTEX_phenotype_test
build/vignette.rds
vignettes/TransProR.Rmd
vignettes/image/TransProR_rlogo.png
data/all_degs_venn.rda
data/gtree.rda
man/enrichment_spiral_plots.Rd
man/Wilcoxon_analyze.Rd
man/adjust_alpha_scale.Rd
man/extract_ntop_pathways.Rd
man/limma_analyze.Rd
man/enrichment_circlize.Rd
man/prep_deseq2.Rd
man/gene_map_pathway.Rd
man/gene_color.Rd
man/process_heatdata.Rd
man/filter_diff_genes.Rd
man/gather_graph_edge.Rd
man/DESeq2_analyze.Rd
man/highlight_genes.Rd
man/drawLegends.Rd
man/Combat_Normal.Rd
man/combat_tumor.Rd
man/spiral_newrle.Rd
man/all_degs_venn.Rd
man/enrich_circo_bar.Rd
man/compare_merge.Rd
man/get_gtex_exp.Rd
man/prep_limma.Rd
man/merge_id_position.Rd
man/merge_density_foldchange.Rd
man/log_transform.Rd
man/gene_highlights.Rd
man/facet_density_foldchange.Rd
man/selectPathways.Rd
man/prep_wilcoxon.Rd
man/merge_method_color.Rd
man/get_tcga_exp.Rd
man/adjust_export_pathway.Rd
man/pipe.Rd
man/extract_positive_pathways.Rd
man/deg_filter.Rd
man/adjust_color_tone.Rd
man/circos_fruits.Rd
man/add_new_tile_layer.Rd
man/four_degs_venn.Rd
man/seek_gtex_organ.Rd
man/merge_gtex_tcga.Rd
man/edgeR_analyze.Rd
man/enrich_polar_bubble.Rd
man/gtree.Rd
man/pathway_description.Rd
man/prep_edgeR.Rd
man/gather_graph_node.Rd
man/new_ggraph.Rd
man/Contrast_Venn.Rd
man/pathway_count.Rd
man/extract_descriptions_counts.Rd
man/highlight_by_node.Rd
man/create_base_plot.Rd
man/add_boxplot.Rd
