TreeSearch: Phylogenetic Tree Search Using Custom Optimality Criteria

Searches for phylogenetic trees that are optimal using a user-defined criterion. Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>. Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.

Package details

AuthorMartin R. Smith [aut, cre, cph] (<>), Martin Brazeau [cph] (<>)
MaintainerMartin R. Smith <>
LicenseGPL (>= 3)
Package repositoryView on CRAN
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TreeSearch documentation built on Feb. 6, 2020, 5:10 p.m.