TreeSearch: Phylogenetic Tree Search Using Custom Optimality Criteria

Searches for phylogenetic trees that are optimal using a user-defined criterion. Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>. Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969) <doi:10.2307/2412182>.

Package details

AuthorMartin R. Smith [aut, cre, cph] (<https://orcid.org/0000-0001-5660-1727>), Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
MaintainerMartin R. Smith <martin.smith@durham.ac.uk>
LicenseGPL (>= 3)
Version0.4.0
URL https://ms609.github.io/TreeSearch https://github.com/ms609/TreeSearch
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("TreeSearch")

Try the TreeSearch package in your browser

Any scripts or data that you put into this service are public.

TreeSearch documentation built on Feb. 6, 2020, 5:10 p.m.