TreeSearch: Phylogenetic Tree Search Using Custom Optimality Criteria

Searches for phylogenetic trees that are optimal using a user-defined criterion. Implements Profile Parsimony (Faith and Trueman, 2001) <doi:10.1080/10635150118627>, and Successive Approximations (Farris, 1969) <doi:10.2307/2412182>. Handles inapplicable data using the algorithm of Brazeau, Guillerme and Smith (2019) <doi:10.1093/sysbio/syy083>.

Package details

AuthorMartin R. Smith [aut, cre, cph] (<https://orcid.org/0000-0001-5660-1727>), Emmanuel Paradis [cph] (<https://orcid.org/0000-0003-3092-2199>), Klaus Schliep [cph] (<https://orcid.org/0000-0003-2941-0161>), Martin Brazeau [cph] (<https://orcid.org/0000-0002-0650-1282>)
MaintainerMartin R. Smith <[email protected]>
LicenseGPL (>= 3)
Version0.2.1
URL https://github.com/ms609/TreeSearch
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("TreeSearch")

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TreeSearch documentation built on Dec. 7, 2018, 5:03 p.m.