API for TreeSearch
Phylogenetic Tree Search Using Custom Optimality Criteria

Global functions
AddTip Man page Source code
AllAncestors Man page Source code
AncestorEdge Man page Source code
Assert Source code
BootstrapTree Man page Source code
BootstrapWeightings Man page Source code
C_Fitch Man page Source code
C_Fitch_Score Man page Source code
C_Fitch_Steps Man page Source code
C_node_depth Man page Source code
CladeSizes Man page Source code
Cladewise Man page Source code
DescendantEdges Man page Source code
DoSectorial Man page Source code
EdgeAncestry Man page Source code
EnforceOutgroup Man page Source code
Fitch Man page Source code
FitchScore Man page Source code
ListToMatrix Man page Source code
Lobo.data Man page
Lobo.phy Man page
NNI Man page Source code
NNICore Man page Source code
NeworderPhylo Man page Source code
NeworderPruningwise Man page Source code
OrderEdgesNumberNodes Man page Source code
Postorder Man page Source code
Preorder Man page Source code
PrepareDataSA Source code
Pruningwise Man page Source code
RandomTree Man page Source code
Ratchet Man page Source code
RearrangeTree Man page Source code
Renumber Man page Source code
RenumberTips Man page Source code
RenumberTree Man page Source code
RenumberTreeList Man page Source code
RootedNNI Man page Source code
RootedNNICore Man page Source code
RootedSPR Man page Source code
RootedSPRCore Man page Source code
RootedTBR Man page Source code
RootedTBRCore Man page Source code
SPR Man page Source code
SPRCore Man page Source code
SPRWarning Man page Source code
SampleOne Man page Source code
SectorHasData Man page Source code
Sectorial Man page Source code
SingleTaxonTree Man page Source code
Suboptimality Man page Source code
Subtree Man page Source code
SuccessiveApproximations Man page Source code
SuccessiveWeights Man page Source code
TBR Man page Source code
TBRCore Man page Source code
TBRWarning Man page Source code
TipsAreColumns Man page Source code
TipsAreNames Man page Source code
TreeSearch Man page Source code
TreeSearch documentation built on Nov. 17, 2017, 8:05 a.m.