MorphyTreeLength | R Documentation |
This function must be passed a valid Morphy object, or R may crash.
For most users, the function TreeLength()
will be more appropriate.
MorphyTreeLength(tree, morphyObj)
MorphyLength(
parent,
child,
morphyObj,
inPostorder = FALSE,
nTaxa = mpl_get_numtaxa(morphyObj)
)
GetMorphyLength(parentOf, leftChild, rightChild, morphyObj)
C_MorphyLength(parentOf, leftChild, rightChild, morphyObj)
tree |
A tree of class |
morphyObj |
Object of class |
parent |
Integer vector corresponding to the first column of the edge
matrix of a tree of class |
child |
Integer vector corresponding to the second column of the edge
matrix of a tree of class |
parentOf |
For each node, numbered in postorder, the number of its parent node. |
leftChild |
For each internal node, numbered in postorder, the number of its left child node or tip. |
rightChild |
For each internal node, numbered in postorder, the number of its right child node or tip. |
MorphyTreeLength()
returns the length of the tree,
after applying weighting.
MorphyLength()
: Faster function that requires internal tree
parameters. Node numbering must increase monotonically away from root.
GetMorphyLength()
: Fastest function that requires internal tree parameters
C_MorphyLength()
: Direct call to C function. Use with caution.
Martin R. Smith
PhyDat2Morphy
Other tree scoring:
CharacterLength()
,
IWScore()
,
LengthAdded()
,
MinimumLength()
,
TaxonInfluence()
Other tree scoring:
CharacterLength()
,
IWScore()
,
LengthAdded()
,
MinimumLength()
,
TaxonInfluence()
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