ImmunePathwayLists: Immune Pathways with Corresponding Gene Markers

ImmunePathwayListsR Documentation

Immune Pathways with Corresponding Gene Markers

Description

This matrix gives a predefined set of marker genes for many immune response pathways, as assembled by Brian Modena (a member of Daniel R Salomon's lab at Scripps Research Institute), and colleagues. It is used with userListEnrichment to search user-defined gene lists for enrichment.

Usage

data(ImmunePathwayLists)

Format

A 3597 x 2 matrix of characters containing Gene / Category pairs. The first column (Gene) lists genes corresponding to a given category (second column). Each Category entry is of the form <Immune Pathway>__ImmunePathway. Note that the matrix is sorted first by Category and then by Gene, such that all genes related to the same category are listed sequentially.

Source

For more information about this list, please see userListEnrichment

Examples

data(ImmunePathwayLists)
head(ImmunePathwayLists)

WGCNA documentation built on April 23, 2022, 1:06 a.m.