PWLists: Pathways with Corresponding Gene Markers - Compiled by Mike...

PWListsR Documentation

Pathways with Corresponding Gene Markers - Compiled by Mike Palazzolo and Jim Wang from CHDI

Description

This matrix gives a predefined set of marker genes for many immune response pathways, as assembled by Mike Palazzolo and Jim Wang from CHDI, and colleagues. It is used with userListEnrichment to search user-defined gene lists for enrichment.

Usage

data(PWLists)

Format

A 124350 x 2 matrix of characters containing 2724 Gene / Category pairs. The first column (Gene) lists genes corresponding to a given category (second column). Each Category entry is of the form <gene set>__<reference>.

Source

For more information about this list, please see userListEnrichment

Examples

data(PWLists)
head(PWLists)

WGCNA documentation built on April 23, 2022, 1:06 a.m.

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