Description Usage Arguments Value Author(s) See Also

The function calculates overlap counts and Fisher exact test p-values for the given two sets of module assignments.

1 2 3 4 | ```
overlapTable(
labels1, labels2,
na.rm = TRUE, ignore = NULL,
levels1 = NULL, levels2 = NULL)
``` |

`labels1` |
a vector containing module labels. |

`labels2` |
a vector containing module labels to be compared to |

`na.rm` |
logical: should entries missing in either |

`ignore` |
an optional vector giving label levels that are to be ignored. |

`levels1` |
optional vector giving levels for |

`levels2` |
optional vector giving levels for |

A list with the following components:

`countTable` |
a matrix whose rows correspond to modules (unique labels) in |

`pTable` |
a matrix whose rows correspond to modules (unique labels) in |

Peter Langfelder

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