overlapTable | R Documentation |

The function calculates overlap counts and Fisher exact test p-values for the given two sets of module assignments.

overlapTable( labels1, labels2, na.rm = TRUE, ignore = NULL, levels1 = NULL, levels2 = NULL)

`labels1` |
a vector containing module labels. |

`labels2` |
a vector containing module labels to be compared to |

`na.rm` |
logical: should entries missing in either |

`ignore` |
an optional vector giving label levels that are to be ignored. |

`levels1` |
optional vector giving levels for |

`levels2` |
optional vector giving levels for |

A list with the following components:

`countTable` |
a matrix whose rows correspond to modules (unique labels) in |

`pTable` |
a matrix whose rows correspond to modules (unique labels) in |

Peter Langfelder

`fisher.test`

, `matchLabels`

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