removeGreyME: Removes the grey eigengene from a given collection of...

In WGCNA: Weighted Correlation Network Analysis

Removes the grey eigengene from a given collection of eigengenes.

Description

Given module eigengenes either in a single data frame or in a multi-set format, removes the grey eigengenes from each set. If the grey eigengenes are not found, a warning is issued.

Usage

removeGreyME(MEs, greyMEName = paste(moduleColor.getMEprefix(), "grey", sep=""))

Arguments

MEs	Module eigengenes, either in a single data frame (typicaly for a single set), or in a multi-set format. See checkSets for a description of the multi-set format.
greyMEName	Name of the module eigengene (in each corresponding data frame) that corresponds to the grey color. This will typically be "PCgrey" or "MEgrey". If the module eigengenes were calculated using standard functions in this library, the default should work.

Value

Module eigengenes in the same format as input (either a single data frame or a vector of lists) with the grey eigengene removed.

Author(s)

Peter Langfelder, [e-mail]

WGCNA documentation built on Sept. 18, 2024, 5:08 p.m.