verboseBoxplot: Boxplot annotated by a Kruskal-Wallis p-value

In WGCNA: Weighted Correlation Network Analysis

Boxplot annotated by a Kruskal-Wallis p-value

Description

Plot a boxplot annotated by the Kruskal-Wallis p-value. Uses the function boxplot for the actual drawing.

Usage

verboseBoxplot(x, g, main = "", xlab = NA, ylab = NA, 
               cex = 1, cex.axis = 1.5, cex.lab = 1.5, cex.main = 1.5, 
               notch = TRUE, varwidth = TRUE, ...,
               addScatterplot = FALSE,
               pt.cex = 0.8, pch = 21, pt.col = "blue", pt.bg = "skyblue",
               randomSeed = 31425, jitter = 0.6)

Arguments

x	numerical vector of data whose group means are to be plotted
g	a factor or a an object coercible to a factor giving the groups that will go into each box.
main	main title for the plot.
xlab	label for the x-axis.
ylab	label for the y-axis.
cex	character expansion factor for plot annotations.
cex.axis	character expansion factor for axis annotations.
cex.lab	character expansion factor for axis labels.
cex.main	character expansion factor for the main title.
notch	logical: should the notches be drawn? See boxplot and boxplot.stats for details.
varwidth	logical: if TRUE, the boxes are drawn with widths proportional to the square-roots of the number of observations in the groups.
...	other arguments to the function boxplot. Of note is the argument las that specifies label orientation. Value las=1 will result in horizontal labels (the default), while las=2 will result in vertical labels, useful when the labels are long.
addScatterplot	logical: should a scatterplot of the data be overlaid?
pt.cex	character expansion factor for the points.
pch	shape code for the points.
pt.col	color for the points.
pt.bg	background color for the points.
randomSeed	integer random seed to make plots reproducible.
jitter	amount of random jitter to add to the position of the points along the x axis.

Value

Returns the value returned by the function boxplot.

Author(s)

Steve Horvath, with contributions from Zhijin (Jean) Wu and Peter Langfelder

See Also

boxplot

WGCNA documentation built on Sept. 18, 2024, 5:08 p.m.