Man pages for aSPU
Adaptive Sum of Powered Score Test
| aSPU | Sum of Powered Score (SPU) tests and adaptive SPU (aSPU) test... |
| aSPUd | Adaptive Sum of powered score (SPU) tests (SPU and aSPU)... |
| aSPUpath | Pathway based Sum of Powered Score tests (SPUpath) and... |
| aSPUpath2 | Pathway based Sum of Powered Score tests (SPUpath) and... |
| aSPUr | Robust Sum of powered score (SPU) tests and aSPU test for a... |
| aSPUs | Sum of Powered Score (SPUs) tests and adaptive SPU (aSPUs)... |
| aSPUsD | Sum of Powered Score (SPUs) tests and adaptive SPU (aSPUs)... |
| aSPUsPath | Pathway based Sum of Powered Score tests (SPUsPath) and... |
| aSPUsPath2 | Pathway based Sum of Powered Score tests (SPUsPath) and... |
| aSPUw | Inverse variance weighted Sum of Powered Score tests (SPUw)... |
| estcov | estcov |
| exdat | An example data set |
| GATES2 | Gene-based Association Test that uses an extended Simes... |
| GatesSimes | GATES-Simes test for single trait - pathway association. |
| GEEaSPU | The SPU and aSPU tests for multiple traits - single SNP... |
| getlogitp | Get the p-values of the multiple SNPs based on the Wald test... |
| Hyst | HYST (Hybrid Set-based Test) for single trait - pathway... |
| kegg9 | A subset of coronary artery disease (CAD) data |
| minP | minP test. |
| MTaSPUs | The SPU and aSPU tests for multiple traits - single SNP... |
| MTaSPUsSet | gene-Multitrait Sum of Powered Score (MTSPUsSet) tests and... |
| MTaSPUsSetPath | Multitraits - Pathway based Sum of Powered Score tests... |
| MTaSPUsSetScore | gene-Multitrait Sum of Powered Score (MTSPUsSetScore) tests... |
| plotPmat | Image plot of P-value matrix. |
| pruneSNP | Prune SNPs (related to aSPUs, aSPUsPath, MTaSPUsSet) |
| SAMD11 | An example data for MTaSPUsSet test |
| simPathAR1Snp | Simulating a pathway with multiple SNPs. |
| someGs | An example data for MTaSPUsSet test |
