getlogitp: Get the p-values of the multiple SNPs based on the Wald test...
In aSPU: Adaptive Sum of Powered Score Test

Description Usage Arguments Value See Also Examples

Get p-value using logistic regresion for each of the multiple SNPs

1	getlogitp(Y, X)

`Y`	Response or phenotype data. It can be a disease indicator; =0 for controls, =1 for cases.
`X`	Genotype or other data; each row for a subject, and each column for an SNP (or a predictor). The value of each SNP is the # of the copies for an allele. A matrix with dimension n by p (n : number of observation, p : number of SNPs (or predictors) ).

p-values for each SNPs.

GATES2 GatesSimes Hyst

#simula <- simPathAR1Snp(nGenes=20, nGenes1=1, nSNPlim=c(1, 20), nSNP0=1:3,
#                           LOR=.2, rholim=c(0,0),
#                           n=10, MAFlim=c(0.05, 0.4), p0=0.05)
#logitp <- getlogitp(simula$Y, simula$X)

aSPU documentation built on June 29, 2021, 1:06 a.m.