someGs: An example data for MTaSPUsSet test

Description Usage References Examples

Description

Genetic Investigation of ANthropometric Traits (GIANT) consortium data contain P-values of 2.7 million SNPs with six anthropometric traits that are well established to represent body size and shape: height, weight, BMI, waist circumference (WC), hip circumference(HIP). The data is downloadable from https://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files

We mapped SNPs on gene LCORL, RASA2, STK33 and RPGRIP1L. This subdata contains P values, correlation matrices for demostrated example of MTaSPUsSet test.

Usage

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References

Shungin D, Winkler TW, Croteau-Chonka DC, Ferreira T, Locke AE, Magi R, Strawbridge R, Pers TH, Fischer K, Justice AE, Workalemahu T, Wu JM, et al. (2015). New genetic loci link adipose and insulin biology to body fat distribution. Nature 518: 187-196.

Examples

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data(someGs)

## P-values for LCORL
someGs$LCORL[[1]]

## correlation matrix for LCORL
someGs$LCORL[[2]]

## P-values for RASA2
someGs$RASA2[[1]]

## correlation matrix for LCORL
someGs$RASA2[[2]]

# See vignettes for more details.

aSPU documentation built on May 1, 2019, 7:04 p.m.