SAMD11: An example data for MTaSPUsSet test

Description Usage References Examples

Description

Genetic Investigation of ANthropometric Traits (GIANT) consortium data contain P-values of 2.7 million SNPs with six anthropometric traits that are well established to represent body size and shape: height, weight, BMI, waist circumference (WC), hip circumference(HIP). The data is downloadable from https://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files

We mapped SNPs on gene SAMD11. This subdata contains P values, Z scores of SNPs mapped on gene SAMD11. It also contains correlation among SNPs and correlation among phenotypes for demostrated example of MTaSPUsSet test.

Usage

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References

Shungin D, Winkler TW, Croteau-Chonka DC, Ferreira T, Locke AE, Magi R, Strawbridge R, Pers TH, Fischer K, Justice AE, Workalemahu T, Wu JM, et al. (2015). New genetic loci link adipose and insulin biology to body fat distribution. Nature 518: 187-196.

Examples

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data(SAMD11)

## Z-scores for man
SAMD11$ZsM

## P-values for man
SAMD11$PsM

## correlation among SNPs for man
SAMD11$corSNPM

## correlation among phenotypes for man
SAMD11$corPheM

aSPU documentation built on May 1, 2019, 7:04 p.m.