Man pages for aaSEA
Amino Acid Substitution Effect Analyser
| AAindex | A data frame of 533 amino acid properties from AAindex. |
| corSubFile | A data frame of correlated sites. |
| Cruciani | A data frame of 3 Cruciani properties for 20 amino acids. |
| Fasgai | A data frame of six Fasgai vectors for 20 amino acids. |
| getAASub | Get amino acid substitutions from multiple sequence alignment |
| getCorPropChange | Get property changes associated with correlated substitutions |
| getCorSites | Get correlated sites with substitutions |
| getPropChange | Get wild type and substituted amino acid properties and... |
| getPropCorr | Get amino acid property wise correlations of co-evolving... |
| getTopSub | Get sites with more than one-correlated substitutions other... |
| Kidera | A data frame of 10 Kidera factors for 20 amino acids |
| matEncode | Function to encode Correlated columns of alignment matrix... |
| plotCorNet | simple interactive network diagram of correlated substitution... |
| plotCorSubChanges | Plot co-evolving sites with selected property correlations |
| plotMultiSubChange | Plots heat map of multiple substitution associated changes... |
| plotSingleSubChange | Plots single substitution change histogram |
| startSeaShiny | Title Enables to start and run the app |
