matEncode: Function to encode Correlated columns of alignment matrix...

In aaSEA: Amino Acid Substitution Effect Analyser

Description

Function to encode Correlated columns of alignment matrix with desired properties

Usage

matEncode(aliMat, pIndex, propDf)

Arguments

aliMat	amino acid multiple sequence alignment in the form of a matrix
pIndex	Amino acid property index to be encoded. It is the row number in the property data frame
propDf	The amino acid property to analyse. It is row number in propertyDF data frame

Value

A matrix of input dimensions with amino acid alphabets replaced by amino acid properties of choice

Examples

aliMatLoc <- system.file("extdata", "aliMat.rda", package = "aaSEA")
aliMat <- readRDS(aliMatLoc)
matEncode(aliMat = aliMat, pIndex = 1, propDf = "Cruciani" )

aaSEA documentation built on Nov. 9, 2019, 5:07 p.m.