getCorSites: Get correlated sites with substitutions
In aaSEA: Amino Acid Substitution Effect Analyser
Description
Usage
Arguments
Value
Examples
Description
Get correlated sites with substitutions
Usage
1
getCorSites(fileLoc, corMethod = "mcbasc")
Arguments
fileLoc
exact location of multiple sequence alignment file in "FASTA" format
corMethod
One of the methods to compute correlated sites viz. 'mip', 'elsc', 'mcbasc' and 'omes'. Default is 'mcbasc'.
Value
A subset alignment matrix of original multiple sequence alignment with significant correlations.
Examples
1
2
file = system.file("extdata", "linB_toy_ali.fasta", package = "aaSEA")
getCorSites(fileLoc = file,corMethod="mcbasc")
aaSEA documentation built on Nov. 9, 2019, 5:07 p.m.
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Description Usage Arguments Value Examples
Description
Get correlated sites with substitutions
Usage
1 | getCorSites(fileLoc, corMethod = "mcbasc")
|
Arguments
fileLoc |
exact location of multiple sequence alignment file in "FASTA" format |
corMethod |
One of the methods to compute correlated sites viz. 'mip', 'elsc', 'mcbasc' and 'omes'. Default is 'mcbasc'. |
Value
A subset alignment matrix of original multiple sequence alignment with significant correlations.
Examples
1 2 | file = system.file("extdata", "linB_toy_ali.fasta", package = "aaSEA")
getCorSites(fileLoc = file,corMethod="mcbasc")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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