getTopSub: Get sites with more than one-correlated substitutions other...
In aaSEA: Amino Acid Substitution Effect Analyser
Description
Usage
Arguments
Value
Examples
Description
Get sites with more than one-correlated substitutions other than conserved amino acids at that position
Usage
1
getTopSub(selMat)
Arguments
selMat
A subset matrix of original multiple sequence alignment with significant correlations identified with 'getCorSites' function
Value
A data frame with two columns i.e. Pos1 and Pos2 which is a filtered subset of many correlated substitutions based on frequency of substitution after consensus of a column in multiple sequence alignment
Examples
1
2
3
selMatLoc <- system.file("extdata", "selMat.rda", package = "aaSEA")
selMat <- readRDS(selMatLoc)
getTopSub(selMat = selMat)
aaSEA documentation built on Nov. 9, 2019, 5:07 p.m.
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Description Usage Arguments Value Examples
Description
Get sites with more than one-correlated substitutions other than conserved amino acids at that position
Usage
1 | getTopSub(selMat)
|
Arguments
selMat |
A subset matrix of original multiple sequence alignment with significant correlations identified with 'getCorSites' function |
Value
A data frame with two columns i.e. Pos1 and Pos2 which is a filtered subset of many correlated substitutions based on frequency of substitution after consensus of a column in multiple sequence alignment
Examples
1 2 3 | selMatLoc <- system.file("extdata", "selMat.rda", package = "aaSEA")
selMat <- readRDS(selMatLoc)
getTopSub(selMat = selMat)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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