getPropChange: Get wild type and substituted amino acid properties and...

Description Usage Arguments Value Examples

View source: R/getPropChange.R

Description

Get wild type and substituted amino acid properties and associated property changes

Usage

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getPropChange(subFile, propertyDF = "Cruciani", propertyIndex = 1)

Arguments

subFile

A data frame of single or multiple substitutions obtained using 'getAASub' function

propertyDF

Choose one of Cruciani, Fasgai, Kidera or AAindex based amino acid properties

propertyIndex

The amino acid property to analyse. It is row number in propertyDF data frame

Value

A substitution data frame with three additional columns i.e. wt.Prop, mu.Prop and Delta.Prop

Examples

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ssFileLoc <- system.file("extdata", "singleSub.rda", package = "aaSEA")
singleSubFile <- readRDS(ssFileLoc)
msFileLoc <- system.file("extdata", "multiSub.rda", package = "aaSEA")
multiSubFile <- readRDS(msFileLoc)
getPropChange(subFile = singleSubFile, propertyDF = "Cruciani", propertyIndex = 1)
getPropChange(subFile = multiSubFile, propertyDF = "Cruciani", propertyIndex = 1)

aaSEA documentation built on Nov. 9, 2019, 5:07 p.m.