Description Usage Arguments Value Examples
View source: R/getPropChange.R
Get wild type and substituted amino acid properties and associated property changes
1 | getPropChange(subFile, propertyDF = "Cruciani", propertyIndex = 1)
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subFile |
A data frame of single or multiple substitutions obtained using 'getAASub' function |
propertyDF |
Choose one of Cruciani, Fasgai, Kidera or AAindex based amino acid properties |
propertyIndex |
The amino acid property to analyse. It is row number in propertyDF data frame |
A substitution data frame with three additional columns i.e. wt.Prop, mu.Prop and Delta.Prop
1 2 3 4 5 6 | ssFileLoc <- system.file("extdata", "singleSub.rda", package = "aaSEA")
singleSubFile <- readRDS(ssFileLoc)
msFileLoc <- system.file("extdata", "multiSub.rda", package = "aaSEA")
multiSubFile <- readRDS(msFileLoc)
getPropChange(subFile = singleSubFile, propertyDF = "Cruciani", propertyIndex = 1)
getPropChange(subFile = multiSubFile, propertyDF = "Cruciani", propertyIndex = 1)
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