AAindex | A data frame of 533 amino acid properties from AAindex. |
corSubFile | A data frame of correlated sites. |
Cruciani | A data frame of 3 Cruciani properties for 20 amino acids. |
Fasgai | A data frame of six Fasgai vectors for 20 amino acids. |
getAASub | Get amino acid substitutions from multiple sequence alignment |
getCorPropChange | Get property changes associated with correlated substitutions |
getCorSites | Get correlated sites with substitutions |
getPropChange | Get wild type and substituted amino acid properties and... |
getPropCorr | Get amino acid property wise correlations of co-evolving... |
getTopSub | Get sites with more than one-correlated substitutions other... |
Kidera | A data frame of 10 Kidera factors for 20 amino acids |
matEncode | Function to encode Correlated columns of alignment matrix... |
plotCorNet | simple interactive network diagram of correlated substitution... |
plotCorSubChanges | Plot co-evolving sites with selected property correlations |
plotMultiSubChange | Plots heat map of multiple substitution associated changes... |
plotSingleSubChange | Plots single substitution change histogram |
startSeaShiny | Title Enables to start and run the app |
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