Man pages for aaSEA
Amino Acid Substitution Effect Analyser

AAindexA data frame of 533 amino acid properties from AAindex.
corSubFileA data frame of correlated sites.
CrucianiA data frame of 3 Cruciani properties for 20 amino acids.
FasgaiA data frame of six Fasgai vectors for 20 amino acids.
getAASubGet amino acid substitutions from multiple sequence alignment
getCorPropChangeGet property changes associated with correlated substitutions
getCorSitesGet correlated sites with substitutions
getPropChangeGet wild type and substituted amino acid properties and...
getPropCorrGet amino acid property wise correlations of co-evolving...
getTopSubGet sites with more than one-correlated substitutions other...
KideraA data frame of 10 Kidera factors for 20 amino acids
matEncodeFunction to encode Correlated columns of alignment matrix...
plotCorNetsimple interactive network diagram of correlated substitution...
plotCorSubChangesPlot co-evolving sites with selected property correlations
plotMultiSubChangePlots heat map of multiple substitution associated changes...
plotSingleSubChangePlots single substitution change histogram
startSeaShinyTitle Enables to start and run the app
aaSEA documentation built on Nov. 9, 2019, 5:07 p.m.