Nothing
.charhull <- function(xy)
{
xy <- as.data.frame(xy)
names(xy) <- c("x","y")
tri <- deldir::deldir(xy[,1], xy[,2])
tri <- deldir::triang.list(tri)
tri <- lapply(1:length(tri), function(i) {
rbind(tri[[i]], tri[[i]][1,])
})
area <- sapply(tri, function(x) {
.arcpspdf(SpatialPolygons(list(Polygons(list(Polygon(x[,2:3])), 1))))
})
tri <- tri[order(area)]
area <- area[order(area)]
df <- data.frame(area=area, percent=100*c(c(1:length(area))/length(area)))
sp <- SpatialPolygons(lapply(1:length(tri), function(i) {
Polygons(list(Polygon(as.matrix(tri[[i]][,2:3]))), i)
}))
res <- SpatialPolygonsDataFrame(sp, df)
return(res)
}
CharHull <- function(xy, unin = c("m", "km"), unout = c("ha", "m2", "km2"),
duplicates = c("random", "remove"), amount = NULL)
{
if (!inherits(xy, "SpatialPoints"))
stop("xy should inherit the class SpatialPoints")
pfs <- proj4string(xy)
if (inherits(xy, "SpatialPointsDataFrame")) {
if (ncol(xy) != 1) {
warning("xy contains more than one column. id ignored")
m <- 1
id <- rep("a", nrow(coordinates(xy)))
}
else {
id <- xy[[1]]
m <- 2
}
} else {
m <- 1
id <- rep("a", nrow(coordinates(xy)))
}
id <- factor(id)
duplicates <- match.arg(duplicates)
unin <- match.arg(unin)
unout <- match.arg(unout)
xy <- as.data.frame(coordinates(xy))
lixy <- split(xy, id)
res <- list()
for (i in 1:length(lixy)) {
x <- as.matrix(lixy[[i]])
levv <- factor(apply(x, 1, paste, collapse = " "))
if (duplicates == "remove") {
x <- as.data.frame(x)
x <- as.matrix(do.call("rbind", lapply(split(x, levv),
function(z) z[1, ])))
}
else {
x <- as.data.frame(x)
sam1 <- x[, 1] - jitter(x[, 1], 1, amount)
sam2 <- x[, 1] - jitter(x[, 1], 1, amount)
lixyt <- split(x, levv)
lisam1 <- split(sam1, levv)
lisam2 <- split(sam2, levv)
x <- as.matrix(do.call("rbind", lapply(1:length(lixyt),
function(a) {
z <- lixyt[[a]]
if (nrow(z) > 1) {
z[, 1] <- z[, 1] + lisam1[[a]]
z[, 2] <- z[, 2] + lisam2[[a]]
}
return(z)
})))
}
resa <- .charhull(x)
resasf <- sf::st_as_sf(resa)
lipsf <- list(sf::st_sf(data.frame(id=1, sf::st_geometry(resasf[1,]))))
for (j in 2:nrow(resasf)) {
lipsf[[j]] <- sf::st_sf(data.frame(id=j,sf::st_union(resasf[1:j,])))
}
lipsfg <- as(do.call(rbind, lipsf), "Spatial")
are <- .arcpspdf(lipsfg[1,])
for (j in 2:length(lipsfg)) {
are[j] <- .arcpspdf(lipsfg[j,])
}
if (unin == "m") {
if (unout == "ha")
are <- are/10000
if (unout == "km2")
are <- are/1e+06
}
if (unin == "km") {
if (unout == "ha")
are <- are * 100
if (unout == "m2")
are <- are * 1e+06
}
df <- data.frame(area = are, percent = resasf[[2]])
resa <- SpatialPolygonsDataFrame(as(lipsfg,"SpatialPolygons"), df)
if (!is.na(pfs))
proj4string(resa) <- CRS(pfs)
res[[i]] <- resa
}
if (m == 1) {
return(res[[1]])
}
else {
names(res) <- names(lixy)
class(res) <- "MCHu"
return(res)
}
}
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