DNAbin2indel: Recode Blocks of Indels
In ape: Analyses of Phylogenetics and Evolution
DNAbin2indel R Documentation
Recode Blocks of Indels
Description
This function scans a set of aligned DNA sequences and returns a
matrix with information of the localisations and lengths on alignment
gaps.
Usage
DNAbin2indel(x)
Arguments
x
an object of class "DNAbin".
Details
The output matrix has the same dimensions than the input one with,
either a numeric value where an alignment gap starts giving the length
of the gap, or zero. The rownames are kept.
Value
a numeric matrix.
Author(s)
Emmanuel Paradis
See Also
DNAbin, as.DNAbin, del.gaps,
seg.sites, image.DNAbin,
checkAlignment
ape documentation built on May 29, 2024, 10:50 a.m.
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| DNAbin2indel | R Documentation |
Recode Blocks of Indels
Description
This function scans a set of aligned DNA sequences and returns a matrix with information of the localisations and lengths on alignment gaps.
Usage
DNAbin2indel(x)
Arguments
x |
an object of class |
Details
The output matrix has the same dimensions than the input one with, either a numeric value where an alignment gap starts giving the length of the gap, or zero. The rownames are kept.
Value
a numeric matrix.
Author(s)
Emmanuel Paradis
See Also
DNAbin, as.DNAbin, del.gaps,
seg.sites, image.DNAbin,
checkAlignment
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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