latag2n: Leading and Trailing Alignment Gaps to N
In ape: Analyses of Phylogenetics and Evolution
latag2n R Documentation
Leading and Trailing Alignment Gaps to N
Description
Substitutes leading and trailing alignment gaps in aligned sequences
into N (i.e., A, C, G, or T). The gaps in the middle of the
sequences are left unchanged.
Usage
latag2n(x)
Arguments
x
an object of class "DNAbin" with the aligned sequences.
Details
This function is called by others in ape and in pegas. It
is documented here in case it needs to be called by other packages.
Value
an object of class "DNAbin".
Author(s)
Emmanuel Paradis
See Also
DNAbin
Examples
x <- as.DNAbin(matrix(c("-", "A", "G", "-", "T", "C"), 2, 3))
y <- latag2n(x)
alview(x)
alview(y)
ape documentation built on May 29, 2024, 10:50 a.m.
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| latag2n | R Documentation |
Leading and Trailing Alignment Gaps to N
Description
Substitutes leading and trailing alignment gaps in aligned sequences
into N (i.e., A, C, G, or T). The gaps in the middle of the
sequences are left unchanged.
Usage
latag2n(x)
Arguments
x |
an object of class |
Details
This function is called by others in ape and in pegas. It is documented here in case it needs to be called by other packages.
Value
an object of class "DNAbin".
Author(s)
Emmanuel Paradis
See Also
DNAbin
Examples
x <- as.DNAbin(matrix(c("-", "A", "G", "-", "T", "C"), 2, 3))
y <- latag2n(x)
alview(x)
alview(y)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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