weight.taxo: Define Similarity Matrix
In ape: Analyses of Phylogenetics and Evolution
weight.taxo R Documentation
Define Similarity Matrix
Description
weight.taxo computes a matrix whose entries [i, j] are set to 1
if x[i] == x[j], 0 otherwise.
weight.taxo2 computes a matrix whose entries [i, j] are set to 1
if x[i] == x[j] AND y[i] != y[j], 0 otherwise.
The diagonal [i, i] is always set to 0.
The returned matrix can be used as a weight matrix in
Moran.I. x and y may be vectors of
factors.
See further details in vignette("MoranI").
Usage
weight.taxo(x)
weight.taxo2(x, y)
Arguments
x, y
a vector or a factor.
Value
a square numeric matrix.
Author(s)
Emmanuel Paradis
See Also
Moran.I, correlogram.formula
ape documentation built on May 29, 2024, 10:50 a.m.
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| weight.taxo | R Documentation |
Define Similarity Matrix
Description
weight.taxo computes a matrix whose entries [i, j] are set to 1
if x[i] == x[j], 0 otherwise.
weight.taxo2 computes a matrix whose entries [i, j] are set to 1
if x[i] == x[j] AND y[i] != y[j], 0 otherwise.
The diagonal [i, i] is always set to 0.
The returned matrix can be used as a weight matrix in
Moran.I. x and y may be vectors of
factors.
See further details in vignette("MoranI").
Usage
weight.taxo(x)
weight.taxo2(x, y)
Arguments
x, y |
a vector or a factor. |
Value
a square numeric matrix.
Author(s)
Emmanuel Paradis
See Also
Moran.I, correlogram.formula
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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