API for apex
Phylogenetic Methods for Multiple Gene Data

Global functions
.checkIDs	Source code
.checkLocusNames	Source code
.isGapOnly	Source code
.isGapOnlyPhyDat	Source code
.nMissingSequences	Source code
[,multidna,ANY,ANY,ANY-method	Man page
[,multidna-method	Man page
[,multiphyDat,ANY,ANY,ANY-method	Man page
[,multiphyDat-method	Man page
[.multidna	Man page
[.multiphyDat	Man page
accessors	Man page
add.gaps	Man page
add.gaps,multidna-method	Man page
add.gaps,multiphyDat-method	Man page
add.gaps.generic	Man page
add.gaps.multidna	Man page
add.gaps.multiphyDat	Man page
apex	Man page
apex-package	Man page
concatenate	Man page
concatenate,multidna-method	Man page
concatenate,multiphyDat-method	Man page
concatenate.generic	Man page
concatenate.multidna	Man page
concatenate.multiphyDat	Man page
data.frameOrNULL	Man page
dist.multidna	Man page Source code
find_gap_sequence	Source code
getLocusNames	Man page
getLocusNames,multidna	Man page
getLocusNames,multidna-method	Man page
getLocusNames,multiphyDat	Man page
getLocusNames,multiphyDat-method	Man page
getNumInd	Man page
getNumInd,multidna	Man page
getNumInd,multidna-method	Man page
getNumInd,multiphyDat	Man page
getNumInd,multiphyDat-method	Man page
getNumLoci	Man page
getNumLoci,multidna	Man page
getNumLoci,multidna-method	Man page
getNumLoci,multiphyDat	Man page
getNumLoci,multiphyDat-method	Man page
getNumSequences	Man page
getNumSequences,multidna	Man page
getNumSequences,multidna-method	Man page
getNumSequences,multiphyDat	Man page
getNumSequences,multiphyDat-method	Man page
getSequenceNames	Man page
getSequenceNames,multidna	Man page
getSequenceNames,multidna-method	Man page
getSequenceNames,multiphyDat	Man page
getSequenceNames,multiphyDat-method	Man page
getSequences	Man page
getSequences,multidna	Man page
getSequences,multidna-method	Man page
getSequences,multiphyDat	Man page
getSequences,multiphyDat-method	Man page
getTree	Man page Source code
initialize,multidna-method	Man page
initialize,multidna-methods	Man page
initialize,multiphyDat-method	Man page
initialize,multiphyDat-methods	Man page
listOrNULL	Man page
multidna	Man page
multidna-class	Man page
multidna2alignment	Man page Source code
multidna2genind	Man page Source code
multidna2multiphyDat	Man page Source code
multiphyDat	Man page
multiphyDat-class	Man page
multiphyDat2alignment	Man page Source code
multiphyDat2genind	Man page Source code
multiphyDat2multidna	Man page Source code
new.multidna	Man page
new.multiphyDat	Man page
plot,multidna-method	Man page
plot.multidna	Man page
read.multiFASTA	Man page Source code
read.multidna	Man page Source code
read.multiphyDat	Man page Source code
rm.gaps	Man page
rm.gaps,multidna-method	Man page
rm.gaps,multiphyDat-method	Man page
rm.gaps.generic	Man page
rm.gaps.multidna	Man page
rm.gaps.multiphyDat	Man page
setLocusNames<-	Man page
setLocusNames<-,multidna	Man page
setLocusNames<-,multidna-method	Man page
setLocusNames<-,multiphyDat	Man page
setLocusNames<-,multiphyDat-method	Man page
show,multidna-method	Man page
show,multiphyDat-method	Man page
show.multidna	Man page
show.multiphyDat	Man page