rm.gaps: Remove gap-only sequences for missing data

Description Usage Arguments

Description

In multidna and multiphyDat, some individuals may not be sequenced for all genes, resulting in gap-only sequences for missing data. The generic function rm.gaps has method for both objects; it identifies the missing sequences, and removes gap-only sequences from the alignments wherever needed.

Usage

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rm.gaps(x, ...)

## S4 method for signature 'multidna'
rm.gaps(x, ...)

## S4 method for signature 'multiphyDat'
rm.gaps(x, ...)

Arguments

x

a multidna or multiphyDat object.

...

further arguments passed to other methods (currently not used).


apex documentation built on April 14, 2020, 5:32 p.m.