multidna2multiphyDat: Conversions between multidna and multiphyDat

In apex: Phylogenetic Methods for Multiple Gene Data

Description

The functions multidna2multiphyDat and multiphyDat2multidna are used to convert data between multidna and multiphyDat classes.

Usage

multidna2multiphyDat(x)

multiphyDat2multidna(x)

Arguments

x	a multidna or multiphyDat object.

Author(s)

Thibaut Jombart [e-mail], Zhian N. Kamvar, Klaus Schliep

See Also

• concatenate

• DNAbin2genind to convert single DNAbin objects.

Examples

## simple conversion with nicely ordered output
data(woodmouse)
genes <- list(gene1=woodmouse[,1:500], gene2=woodmouse[,501:965])
x <- new("multidna", genes)
x

## conversion multidna -> multiphyDat
y <- multidna2multiphyDat(x)
y

## check round trip
identical(x, multiphyDat2multidna(y))

apex documentation built on April 14, 2020, 5:32 p.m.