add.gaps: Add gap-only sequences for missing data

Description Usage Arguments

Description

In multidna and multiphyDat, some individuals may not be sequenced for all genes. The generic function add.gaps has method for both objects; it identifies the missing sequences, and adds gap-only sequences to the alignments wherever needed.

Usage

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add.gaps(x, ...)

## S4 method for signature 'multidna'
add.gaps(x, ...)

## S4 method for signature 'multiphyDat'
add.gaps(x, ...)

Arguments

x

a multidna or multiphyDat object.

...

further arguments passed to other methods (currently not used).


apex documentation built on May 29, 2017, 9:56 a.m.

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