Man pages for apex
Phylogenetic Methods for Multiple Gene Data
| accessors | multidna Accessors |
| add.gaps | Add gap-only sequences for missing data |
| apex-package | apex: Phylogenetic Methods for Multiple Gene Data |
| concatenate | Concatenate genes into a single matrix |
| dist.multidna | Pairwise distances for multiple gene data |
| getTree | Build phylogenies from multiple gene data |
| initialize-multidna-method | multidna constructor |
| initialize-multiphyDat-method | multiphyDat constructor |
| multidna | multidna: class for multiple gene data |
| multidna2alignment | Convert from multidna into alignment (seqinr) |
| multidna2genind | Convert multidna into genind |
| multidna2multiphyDat | Conversions between multidna and multiphyDat |
| multiphyDat | multiphyDat: class for multiple gene data |
| plot-multidna-method | Display multidna objects |
| readfiles | Read multiple DNA alignments |
| rm.gaps | Remove gap-only sequences for missing data |
| show-multidna-method | Display multidna objects |
| show-multiphyDat-method | Display multiphyDat objects |
| subset.multidna | Subset multidna objects |
