NormExpBackgroundCorrection: The NormExpBackgroundCorrection class

Description Usage Arguments Fields and Methods Author(s) See Also


Package: aroma.affymetrix
Class NormExpBackgroundCorrection


Directly known subclasses:

public static class NormExpBackgroundCorrection
extends LimmaBackgroundCorrection

This class represents the normal exponential background correction model. Estimators of the limma package is used.


NormExpBackgroundCorrection(..., method=c("rma", "saddle", "mle"))



Arguments passed to the constructor of LimmaBackgroundCorrection.


The estimator used, cf. argument normexp.method of backgroundCorrect in limma for more details.

Fields and Methods

No methods defined.

Methods inherited from LimmaBackgroundCorrection:
getAsteriskTags, getParameters, process

Methods inherited from BackgroundCorrection:
getParameters, process

Methods inherited from ProbeLevelTransform:

Methods inherited from Transform:
getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform:
as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface:
getParameterSets, getParameters, getParametersAsString

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis


Henrik Bengtsson

See Also

Internally, backgroundCorrect is used.

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