SpatialReporter: The SpatialReporter class
In aroma.affymetrix: Analysis of Large Affymetrix Microarray Data Sets

SpatialReporter

R Documentation

The SpatialReporter class

Description

Package: aroma.affymetrix
Class SpatialReporter

Object
~~|
~~+--GenericReporter
~~~~~~~|
~~~~~~~+--AffymetrixFileSetReporter
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AffymetrixCelSetReporter
~~~~~~~~~~~~~~~~~|
~~~~~~~~~~~~~~~~~+--SpatialReporter

Directly known subclasses:

public abstract static class SpatialReporter
extends AffymetrixCelSetReporter

A SpatialReporter generates image files of spatial representations of cell signals for each of the arrays in the input set.

Usage

SpatialReporter(..., reference=NULL)

Arguments

`...`	Arguments passed to `AffymetrixCelSetReporter`.
`reference`	An optional reference `AffymetrixCelFile`.

Fields and Methods

Methods:

	`addColorMap`	-
	`getColorMaps`	-
	`plotMargins`	-
	`process`	-
	`setColorMaps`	-

Methods inherited from AffymetrixCelSetReporter:
as.character, getChipType, getDataSet, getPath, nbrOfArrays

Methods inherited from AffymetrixFileSetReporter:
getFileSet, getInputName, getInputTags

Methods inherited from GenericReporter:
as.character, getAlias, getAsteriskTags, getFullName, getInputName, getInputTags, getMainPath, getName, getPath, getReportSet, getRootPath, getTags, process, setAlias, setup

Methods inherited from Object:
$, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis