computeAffinities.AffymetrixCdfFile | R Documentation |
Calculates probe affinities from sequence.
Adapted from compute.affinities
in the gcrma package.
Attempts to find the tab-separated probe sequence file associated with
a particular CDF, and matches sequence to probe index in order to assign
an affinity to each probe.
## S3 method for class 'AffymetrixCdfFile'
computeAffinities(this, safe=TRUE, force=FALSE, verbose=FALSE, ...)
safe |
A |
force |
If |
verbose |
See |
... |
Not used. |
Returns a numeric
vector
of (log2) probe affinities, of length equal
to the total number of features on the array.
Ken Simpson, Henrik Bengtsson, Mark Robinson
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