fitQuantileNormFcn.AffymetrixCelFile: Fits quantile normalization functions for the arrays in the...

Description Usage Arguments Value Author(s) See Also

Description

Fits quantile normalization functions for the arrays in the data set.

Usage

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## S3 method for class 'AffymetrixCelFile'
fitQuantileNormFcn(this, yTarget, subset=NULL, ..., spar=NULL, nknots=1024,
  verbose=FALSE)

Arguments

yTarget

The target probe signals.

subset

An optional numeric vector specifying the indices of the subset of probes to be used to fit the normalization function.

spar, nknots

Control parameters passed to smooth.spline.

...

Not used.

verbose

See Verbose.

Value

Returns a normalization function.

Author(s)

Henrik Bengtsson

See Also

For more information see AffymetrixCelFile.


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